Literature DB >> 17284065

Correction of systematic errors in single-molecule force spectroscopy with polymeric tethers by atomic force microscopy.

Chad Ray1, Jason R Brown, Boris B Akhremitchev.   

Abstract

Single-molecule force spectroscopy has become a valuable tool for the investigation of intermolecular energy landscapes for a wide range of molecular associations. Atomic force microscopy (AFM) is often used as an experimental technique in these measurements, and the Bell-Evans model is commonly used in the statistical analysis of rupture forces. Most applications of the Bell-Evans model consider a constant loading rate of force applied to the intermolecular bond. The data analysis is often inconsistent because either the probe velocity or the apparent loading rate is being used as an independent parameter. These approaches provide different results when used in AFM-based experiments. Significant variations in results arise from the relative stiffness of the AFM force sensor in comparison with the stiffness of polymeric tethers that link the molecules under study to the solid surfaces. An analytical model presented here accounts for the systematic errors in force-spectroscopy parameters arising from the nonlinear loading induced by polymer tethers. The presented analytical model is based on the Bell-Evans model of the kinetics of forced dissociation and on the asymptotic models of tether stretching. The two most common data reduction procedures are analyzed, and analytical expressions for the systematic errors are provided. The model shows that the barrier width is underestimated and that the dissociation rate is significantly overestimated when force-spectroscopy data are analyzed without taking into account the elasticity of the polymeric tether. Systematic error estimates for asymptotic freely jointed chain and wormlike chain polymer models are given for comparison. The analytical model based on the asymptotic freely jointed chain stretching is employed to analyze and correct the results of the double-tether force-spectroscopy experiments of disjoining "hydrophobic bonds" between individual hexadecane molecules that are covalently tethered via poly(ethylene glycol) linkers of different lengths to the substrates and to the AFM probes. Application of the correction algorithm decreases the spread of the data from the mean value, which is particularly important for measurements of the dissociation rate, and increases the barrier width to 0.43 nm, which might be indicative of the theoretically predicted hydrophobic dewetting.

Entities:  

Year:  2007        PMID: 17284065     DOI: 10.1021/jp065530h

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  23 in total

1.  Theory, analysis, and interpretation of single-molecule force spectroscopy experiments.

Authors:  Olga K Dudko; Gerhard Hummer; Attila Szabo
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-13       Impact factor: 11.205

2.  Effects of multiple-bond ruptures on kinetic parameters extracted from force spectroscopy measurements: revisiting biotin-streptavidin interactions.

Authors:  Senli Guo; Chad Ray; Andrea Kirkpatrick; Nimit Lad; Boris B Akhremitchev
Journal:  Biophys J       Date:  2008-07-11       Impact factor: 4.033

3.  Early stages for Parkinson's development: alpha-synuclein misfolding and aggregation.

Authors:  Junping Yu; Yuri L Lyubchenko
Journal:  J Neuroimmune Pharmacol       Date:  2008-07-17       Impact factor: 4.147

4.  Single-molecule pulling experiments: when the stiffness of the pulling device matters.

Authors:  Z Tshiprut; J Klafter; M Urbakh
Journal:  Biophys J       Date:  2008-07-25       Impact factor: 4.033

5.  Modeling and simulation of chemomechanics at the cell-matrix interface.

Authors:  Ranjani Krishnan; Binu Oommen; Emily B Walton; John M Maloney; Krystyn J Van Vliet
Journal:  Cell Adh Migr       Date:  2008-04-17       Impact factor: 3.405

6.  Two barriers or not? Dynamic force spectroscopy on the integrin α7β1 invasin complex.

Authors:  Kristian Boye; Agnieszka Ligezowska; Johannes A Eble; Bernd Hoffmann; Beate Klösgen; Rudolf Merkel
Journal:  Biophys J       Date:  2013-12-17       Impact factor: 4.033

7.  Quantitative analysis of single-molecule RNA-protein interaction.

Authors:  Alexander Fuhrmann; Jan C Schoening; Dario Anselmetti; Dorothee Staiger; Robert Ros
Journal:  Biophys J       Date:  2009-06-17       Impact factor: 4.033

8.  Kinetics of the multistep rupture of fibrin 'A-a' polymerization interactions measured using atomic force microscopy.

Authors:  Laurel E Averett; Mark H Schoenfisch; Boris B Akhremitchev; Oleg V Gorkun
Journal:  Biophys J       Date:  2009-11-18       Impact factor: 4.033

9.  Exploring transferrin-receptor interactions at the single-molecule level.

Authors:  Alexandre Yersin; Toshiya Osada; Atsushi Ikai
Journal:  Biophys J       Date:  2007-09-14       Impact factor: 4.033

10.  A Simple and Practical Spreadsheet-Based Method to Extract Single-Molecule Dissociation Kinetics from Variable Loading-Rate Force Spectroscopy Data.

Authors:  Michael J Serpe; Farrell R Kersey; Jason R Whitehead; Scott M Wilson; Robert L Clark; Stephen L Craig
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2008-12-11       Impact factor: 4.126

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