| Literature DB >> 17283640 |
Nelson Lee, Chun K Wong, Wai Y Lam, Ann Wong, Wilina Lim, Christopher W K Lam, Clive S Cockram, Joseph J Y Sung, Paul K S Chan, Julian W Tang.
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Year: 2006 PMID: 17283640 PMCID: PMC3372348 DOI: 10.3201/eid1211.060574
Source DB: PubMed Journal: Emerg Infect Dis ISSN: 1080-6040 Impact factor: 6.883
Figure A1The maximum-likelihood phylogenetic tree for chikungunya envelope glyprotein 1 (E1) sequences (199 bp) constructed by using PAUP* under a Tamura-Nei 1993 model with invariable sites (i.e., TrN+I), as selected by MODELTEST (version 3.7) under the Akaike information criteria. The bracket shows that the PWH patient E1 sequence (DQ489787) clusters most closely with the outbreak La Reunion sequence (LR2006_OPY1_Reunion_2006_E1, DQ443544). Only bootstrap values >70 are shown and considered significant. The tree is rooted against the earliest sequence (AF490259/Ross_Tanzania_1953).
Figure A2The maximum likelihood phylogenetic tree for chikungunya nonstructural protein 1 (NSP1) sequences (314 bp) constructed using PAUP* under a transitional model with equal base frequencies with a γ-distributed rate of substitution (i.e., TIM+G), as selected by MODELTEST (version 3.7) under the Akaike information criteria. The bracket shows that the PWH patient NSP1 sequence (DQ489788) clusters most closely with the outbreak La Reunion sequence (LR2006_OPY1_Reunion_2006_NSP1, DQ443544). Only bootstrap values >70 are shown and considered significant. The tree is rooted against the earliest sequence (AF490259/Ross_Tanzania_1953).
Serum cytokine profiles of patient with chikungunya infection, days 2 and 6 of illness*
| Serum cytokine profile (ng/L) | Time after onset of illness | |
|---|---|---|
| 2 d | 6 d | |
| IFN-γ, N<15.6 | UD | UD |
| IL-1β, N<7.2 | 2.4 | 1.5 |
| IL-6, N<3.1 | UD | 1.3 |
| IL-10, N<7.8 | 1.7 | 1.7 |
| IL-12 p70, N<7.8 | 3.6 | 1.4 |
| TNF-α, N<10.0 | UD | UD |
| CXCL8, N<10.0 | 45.3 | 54.3 |
| CXCL10†, N = 232–1,019 | 26,319 | 16,156 |
| CCL2†, N = 18–152 | 445 | 257 |
| CXCL9†, N = 37–463 | 1,138 | 1,605 |
| CCL5, N = 10,349–46,704 | 24,745 | 60,671 |
*N, normal range; IFN, interferon; IL, interleukin; UD, undetected; TNF, tumor necrosis factor. †Both 2 d and 6 d samples above normal range.