Literature DB >> 17275851

Lipid domain boundaries as prebiotic catalysts of peptide bond formation.

D J Raine1, V Norris.   

Abstract

To address central problems in the origin of life such as the formation of linear polymers composed of only a small number of types of molecules, we have modeled the distribution of peptides in lipid monolayers. We show that short peptides and amino acids accumulate at the boundary between lipid domains, and that the concentration towards the boundary is higher the longer the peptide. We invoke a constraint on diffusion to one dimension as well as on orientation to suggest that polymerization of peptides is more likely to occur at the domain boundary than within domains or in the bulk phase. In a simple model, in which polymerization is taken to occur only at the boundary, we show that the equilibrium distribution of polymer lengths is shifted towards longer peptides. Since the reaction is occurring in a partially non-aqueous environment, hydrolysis is reduced and condensation increased to yield a significant polymerization. We show also that the free energy change from the redistribution of peptides within domains is sufficient to drive the formation of the peptide bond.

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Year:  2006        PMID: 17275851     DOI: 10.1016/j.jtbi.2006.12.019

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  10 in total

1.  Question 7: the first units of life were not simple cells.

Authors:  Vic Norris; Axel Hunding; Francois Kepes; Doron Lancet; Abraham Minsky; Derek Raine; Robert Root-Bernstein; K Sriram
Journal:  Orig Life Evol Biosph       Date:  2007-07-10       Impact factor: 1.950

2.  New approaches to the problem of generating coherent, reproducible phenotypes.

Authors:  Vic Norris; Ghislain Gangwe Nana; Jean-Nicolas Audinot
Journal:  Theory Biosci       Date:  2013-06-21       Impact factor: 1.919

Review 3.  Does the Semiconservative Nature of DNA Replication Facilitate Coherent Phenotypic Diversity?

Authors:  Vic Norris
Journal:  J Bacteriol       Date:  2019-05-22       Impact factor: 3.490

4.  How did metabolism and genetic replication get married?

Authors:  Vic Norris; Corinne Loutelier-Bourhis; Alain Thierry
Journal:  Orig Life Evol Biosph       Date:  2012-10-14       Impact factor: 1.950

5.  Membranes Composed of Lipopeptides and Liponucleobases Inspired Protolife Evolution.

Authors:  Gordon D Sproul
Journal:  Orig Life Evol Biosph       Date:  2019-12-27       Impact factor: 1.950

6.  Molecular complementarity between simple, universal molecules and ions limited phenotype space in the precursors of cells.

Authors:  Vic Norris; Rosetta N Reusch; Kazuei Igarashi; Robert Root-Bernstein
Journal:  Biol Direct       Date:  2014-12-04       Impact factor: 4.540

Review 7.  Small and Random Peptides: An Unexplored Reservoir of Potentially Functional Primitive Organocatalysts. The Case of Seryl-Histidine.

Authors:  Rafal Wieczorek; Katarzyna Adamala; Tecla Gasperi; Fabio Polticelli; Pasquale Stano
Journal:  Life (Basel)       Date:  2017-04-09

8.  Footprints of a Singular 22-Nucleotide RNA Ring at the Origin of Life.

Authors:  Jacques Demongeot; Alexandra Henrion-Caude
Journal:  Biology (Basel)       Date:  2020-04-25

9.  Entrapment of water by subunit c of ATP synthase.

Authors:  Julie E M McGeoch; Malcolm W McGeoch
Journal:  J R Soc Interface       Date:  2008-03-06       Impact factor: 4.118

10.  Effects of Phenylalanine on the Liquid-Expanded and Liquid-Condensed States of Phosphatidylcholine Monolayers.

Authors:  Andrea C Cutro; E Anibal Disalvo; María A Frías
Journal:  Lipid Insights       Date:  2019-01-05
  10 in total

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