Literature DB >> 17272846

Crystallization of RNA-protein complexes.

Eiji Obayashi1, Chris Oubridge, Daniel Pomeranz Krummel, Kiyoshi Nagai.   

Abstract

RNA-binding proteins play crucial roles in many biological processes, such as transcription, pre-mRNA splicing, nuclear-cytoplasmic transport of RNA, and translation of mRNA. Specific RNA-protein interactions are key to the correct assembly of ribonucleoprotein complexes and their biological functions. To date, more than 100 unique RNA-protein crystals have been prepared and there are more than 300 entries of RNA-protein complex structures in the Protein Data Bank. This chapter focuses on methods of RNA-protein complex crystallization discussed in six sections: determination of protein-binding sites in RNA, preparation of RNA, preparation of protein, annealing of RNA, reconstitution of RNA-protein complex, and searching crystallization conditions.

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Year:  2007        PMID: 17272846     DOI: 10.1007/978-1-59745-209-0_13

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  4 in total

1.  In Vitro Reconstitution and Crystallization of Cas9 Endonuclease Bound to a Guide RNA and a DNA Target.

Authors:  Carolin Anders; Ole Niewoehner; Martin Jinek
Journal:  Methods Enzymol       Date:  2015-03-12       Impact factor: 1.600

2.  An RNA aptamer possessing a novel monovalent cation-mediated fold inhibits lysozyme catalysis by inhibiting the binding of long natural substrates.

Authors:  Camille S Padlan; Vladimir N Malashkevich; Steve C Almo; Matthew Levy; Michael Brenowitz; Mark E Girvin
Journal:  RNA       Date:  2014-02-25       Impact factor: 4.942

3.  Accurate prediction of RNA-binding protein residues with two discriminative structural descriptors.

Authors:  Meijian Sun; Xia Wang; Chuanxin Zou; Zenghui He; Wei Liu; Honglin Li
Journal:  BMC Bioinformatics       Date:  2016-06-07       Impact factor: 3.169

4.  In vitro reconstitution and analysis of eukaryotic RNase P RNPs.

Authors:  Anna Perederina; Igor Berezin; Andrey S Krasilnikov
Journal:  Nucleic Acids Res       Date:  2018-07-27       Impact factor: 16.971

  4 in total

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