Literature DB >> 17267433

Ontology development for biological systems: immunology.

Alexander D Diehl1, Jamie A Lee, Richard H Scheuermann, Judith A Blake.   

Abstract

UNLABELLED: We recently implemented improvements to the representation of immunology content of the biological process branch of the Gene Ontology (GO). The aims of the revision were to provide a comprehensive representation of immunological processes and to improve the organization of immunology related terms in the GO to match current concepts in the field of immunology. With these improvements, the GO will better reflect current understanding in the field of immunology and thus prove to be a more valuable resource for knowledge representation in gene annotation and analysis in the areas of immunology related to genomics and bioinformatics. AVAILABILITY: http://www.geneontology.org.

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Year:  2007        PMID： 17267433     DOI： 10.1093/bioinformatics/btm029

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  18 in total

Review 1.  Access to immunology through the Gene Ontology.

Authors:  Ruth C Lovering; Evelyn B Camon; Judith A Blake; Alexander D Diehl
Journal:  Immunology       Date:  2008-10       Impact factor: 7.397

2.  Hematopoietic cell types: prototype for a revised cell ontology.

Authors:  Alexander D Diehl; Alison Deckhut Augustine; Judith A Blake; Lindsay G Cowell; Elizabeth S Gold; Timothy A Gondré-Lewis; Anna Maria Masci; Terrence F Meehan; Penelope A Morel; Anastasia Nijnik; Bjoern Peters; Bali Pulendran; Richard H Scheuermann; Q Alison Yao; Martin S Zand; Christopher J Mungall
Journal:  J Biomed Inform       Date:  2010-02-01       Impact factor: 6.317

3.  Novel sequence feature variant type analysis of the HLA genetic association in systemic sclerosis.

Authors:  David R Karp; Nishanth Marthandan; Steven G E Marsh; Chul Ahn; Frank C Arnett; David S Deluca; Alexander D Diehl; Raymond Dunivin; Karen Eilbeck; Michael Feolo; Paula A Guidry; Wolfgang Helmberg; Suzanna Lewis; Maureen D Mayes; Chris Mungall; Darren A Natale; Bjoern Peters; Effie Petersdorf; John D Reveille; Barry Smith; Glenys Thomson; Matthew J Waller; Richard H Scheuermann
Journal:  Hum Mol Genet       Date:  2009-11-18       Impact factor: 6.150

4.  MicroRNA regulate immunological pathways in T-cells in immune thrombocytopenia (ITP).

Authors:  Margareta Jernås; Intawat Nookaew; Hans Wadenvik; Bob Olsson
Journal:  Blood       Date:  2013-01-09       Impact factor: 22.113

5.  The representation of heart development in the gene ontology.

Authors:  Varsha K Khodiyar; David P Hill; Doug Howe; Tanya Z Berardini; Susan Tweedie; Philippa J Talmud; Ross Breckenridge; Shoumo Bhattarcharya; Paul Riley; Peter Scambler; Ruth C Lovering
Journal:  Dev Biol       Date:  2011-03-17       Impact factor: 3.582

6.  How the gene ontology evolves.

Authors:  Sabina Leonelli; Alexander D Diehl; Karen R Christie; Midori A Harris; Jane Lomax
Journal:  BMC Bioinformatics       Date:  2011-08-05       Impact factor: 3.169

7.  The impact of focused Gene Ontology curation of specific mammalian systems.

Authors:  Yasmin Alam-Faruque; Rachael P Huntley; Varsha K Khodiyar; Evelyn B Camon; Emily C Dimmer; Tony Sawford; Maria J Martin; Claire O'Donovan; Philippa J Talmud; Peter Scambler; Rolf Apweiler; Ruth C Lovering
Journal:  PLoS One       Date:  2011-12-09       Impact factor: 3.240

8.  Gene Ontology annotations: what they mean and where they come from.

Authors:  David P Hill; Barry Smith; Monica S McAndrews-Hill; Judith A Blake
Journal:  BMC Bioinformatics       Date:  2008-04-29       Impact factor: 3.169

9.  Muscle Research and Gene Ontology: New standards for improved data integration.

Authors:  Erika Feltrin; Stefano Campanaro; Alexander D Diehl; Elisabeth Ehler; Georgine Faulkner; Jennifer Fordham; Chiara Gardin; Midori Harris; David Hill; Ralph Knoell; Paolo Laveder; Lorenza Mittempergher; Alessandra Nori; Carlo Reggiani; Vincenzo Sorrentino; Pompeo Volpe; Ivano Zara; Giorgio Valle; Jennifer Deegan
Journal:  BMC Med Genomics       Date:  2009-01-29       Impact factor: 3.063

10.  The Gene Ontology project in 2008.

Authors: 
Journal:  Nucleic Acids Res       Date:  2007-11-04       Impact factor: 16.971
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