Literature DB >> 17255937

Hexameric structures of the archaeal secretion ATPase GspE and implications for a universal secretion mechanism.

Atsushi Yamagata1, John A Tainer.   

Abstract

The secretion superfamily ATPases are conserved motors in key microbial membrane transport and filament assembly machineries, including bacterial type II and IV secretion, type IV pilus assembly, natural competence, and archaeal flagellae assembly. We report here crystal structures and small angle X-ray scattering (SAXS) solution analyses of the Archaeoglobus fulgidus secretion superfamily ATPase, afGspE. AfGspE structures in complex with ATP analogue AMP-PNP and Mg(2+) reveal for the first time, alternating open and closed subunit conformations within a hexameric ring. The closed-form active site with bound Mg(2+) evidently reveals the catalytically active conformation. Furthermore, nucleotide binding results and SAXS analyses of ADP, ATPgammaS, ADP-Vi, and AMP-PNP-bound states in solution showed that asymmetric assembly involves ADP binding, but clamped closed conformations depend on both ATP gamma-phosphate and Mg(2+) plus the conserved motifs, arginine fingers, and subdomains of the secretion ATPase superfamily. Moreover, protruding N-terminal domain shifts caused by the closed conformation suggest a unified piston-like, push-pull mechanism for ATP hydrolysis-dependent conformational changes, suitable to drive diverse microbial secretion and assembly processes by a universal mechanism.

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Year:  2007        PMID: 17255937      PMCID: PMC1794398          DOI: 10.1038/sj.emboj.7601544

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  42 in total

1.  Phylogeny of genes for secretion NTPases: identification of the widespread tadA subfamily and development of a diagnostic key for gene classification.

Authors:  P J Planet; S C Kachlany; R DeSalle; D H Figurski
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-27       Impact factor: 11.205

2.  Structure and mechanism of the RuvB Holliday junction branch migration motor.

Authors:  C D Putnam; S B Clancy; H Tsuruta; S Gonzalez; J G Wetmur; J A Tainer
Journal:  J Mol Biol       Date:  2001-08-10       Impact factor: 5.469

Review 3.  Signal peptides of secreted proteins of the archaeon Sulfolobus solfataricus: a genomic survey.

Authors:  Sonja-Verena Albers; Arnold M Driessen
Journal:  Arch Microbiol       Date:  2002-01-11       Impact factor: 2.552

4.  Crystal structure of the hexameric traffic ATPase of the Helicobacter pylori type IV secretion system.

Authors:  H J Yeo; S N Savvides; A B Herr; E Lanka; G Waksman
Journal:  Mol Cell       Date:  2000-12       Impact factor: 17.970

Review 5.  Prokaryotic motility structures.

Authors:  Sonia L Bardy; Sandy Y M Ng; Ken F Jarrell
Journal:  Microbiology       Date:  2003-02       Impact factor: 2.777

6.  VirB11 ATPases are dynamic hexameric assemblies: new insights into bacterial type IV secretion.

Authors:  Savvas N Savvides; Hye-Jeong Yeo; Moriah R Beck; Franca Blaesing; Rudi Lurz; Erich Lanka; Renate Buhrdorf; Wolfgang Fischer; Rainer Haas; Gabriel Waksman
Journal:  EMBO J       Date:  2003-05-01       Impact factor: 11.598

7.  Mutants in flaI and flaJ of the archaeon Methanococcus voltae are deficient in flagellum assembly.

Authors:  Nikhil A Thomas; Steffen Mueller; Albrecht Klein; Ken F Jarrell
Journal:  Mol Microbiol       Date:  2002-11       Impact factor: 3.501

8.  The fla gene cluster is involved in the biogenesis of flagella in Halobacterium salinarum.

Authors:  N Patenge; A Berendes; H Engelhardt; S C Schuster; D Oesterhelt
Journal:  Mol Microbiol       Date:  2001-08       Impact factor: 3.501

9.  Cross-talk in the A1-ATPase from Methanosarcina mazei Go1 due to nucleotide binding.

Authors:  Unal Coskun; Gerhard Grüber; Michel H J Koch; Jasminka Godovac-Zimmermann; Thorsten Lemker; Volker Müller
Journal:  J Biol Chem       Date:  2002-02-19       Impact factor: 5.157

10.  Type IV pilin structure and assembly: X-ray and EM analyses of Vibrio cholerae toxin-coregulated pilus and Pseudomonas aeruginosa PAK pilin.

Authors:  Lisa Craig; Ronald K Taylor; Michael E Pique; Brian D Adair; Andrew S Arvai; Mona Singh; Sarah J Lloyd; David S Shin; Elizabeth D Getzoff; Mark Yeager; Katrina T Forest; John A Tainer
Journal:  Mol Cell       Date:  2003-05       Impact factor: 17.970

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  56 in total

1.  Regulation of the type IV secretion ATPase TrwD by magnesium: implications for catalytic mechanism of the secretion ATPase superfamily.

Authors:  Jorge Ripoll-Rozada; Alejandro Peña; Susana Rivas; Fernando Moro; Fernando de la Cruz; Elena Cabezón; Ignacio Arechaga
Journal:  J Biol Chem       Date:  2012-03-30       Impact factor: 5.157

2.  ATP induces conformational changes in the carboxyl-terminal region of ClC-5.

Authors:  Leigh Wellhauser; Cesar Luna-Chavez; Christina D'Antonio; John Tainer; Christine E Bear
Journal:  J Biol Chem       Date:  2010-12-20       Impact factor: 5.157

3.  The Type IV Pilus Assembly ATPase PilB of Myxococcus xanthus Interacts with the Inner Membrane Platform Protein PilC and the Nucleotide-binding Protein PilM.

Authors:  Lisa Franziska Bischof; Carmen Friedrich; Andrea Harms; Lotte Søgaard-Andersen; Chris van der Does
Journal:  J Biol Chem       Date:  2016-02-05       Impact factor: 5.157

Review 4.  Type IV pili: paradoxes in form and function.

Authors:  Lisa Craig; Juliana Li
Journal:  Curr Opin Struct Biol       Date:  2008-02-04       Impact factor: 6.809

5.  PilB and PilT are ATPases acting antagonistically in type IV pilus function in Myxococcus xanthus.

Authors:  Vladimir Jakovljevic; Simone Leonardy; Michael Hoppert; Lotte Søgaard-Andersen
Journal:  J Bacteriol       Date:  2008-01-25       Impact factor: 3.490

Review 6.  Diversity of archaeal type IV pilin-like structures.

Authors:  Sonja-Verena Albers; Mecky Pohlschröder
Journal:  Extremophiles       Date:  2009-04-05       Impact factor: 2.395

7.  Integration of small-angle X-ray scattering data into structural modeling of proteins and their assemblies.

Authors:  Friedrich Förster; Benjamin Webb; Kristin A Krukenberg; Hiro Tsuruta; David A Agard; Andrej Sali
Journal:  J Mol Biol       Date:  2008-07-31       Impact factor: 5.469

8.  Functional interactions of VirB11 traffic ATPases with VirB4 and VirD4 molecular motors in type IV secretion systems.

Authors:  Jorge Ripoll-Rozada; Sandra Zunzunegui; Fernando de la Cruz; Ignacio Arechaga; Elena Cabezón
Journal:  J Bacteriol       Date:  2013-07-12       Impact factor: 3.490

Review 9.  Type IV pili in Gram-positive bacteria.

Authors:  Stephen Melville; Lisa Craig
Journal:  Microbiol Mol Biol Rev       Date:  2013-09       Impact factor: 11.056

10.  Crystal structure of the full-length ATPase GspE from the Vibrio vulnificus type II secretion system in complex with the cytoplasmic domain of GspL.

Authors:  Connie Lu; Konstantin V Korotkov; Wim G J Hol
Journal:  J Struct Biol       Date:  2014-08-01       Impact factor: 2.867

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