Literature DB >> 17254757

How are small ions involved in the compaction of DNA molecules?

Takafumi Iwaki1, Takuya Saito, Kenichi Yoshikawa.   

Abstract

DNA is a genetic material found in all life on Earth. DNA is composed of four types of nucleotide subunits, and forms a double-helical one-dimensional polyelectrolyte chain. If we focus on the microscopic molecular structure, DNA is a rigid rod-like molecule. On the other hand, with coarse graining, a long-chain DNA exhibits fluctuating behavior over the whole molecule due to thermal fluctuation. Owe to its semiflexible nature, individual giant DNA molecule undergoes a large discrete transition in the higher-order structure. In this folding transition into a compact state, small ions in the solution have a critical effect, since DNA is highly charged. In the present article, we interpret the characteristic features of DNA compaction while paying special attention to the role of small ions, in relation to a variety of single-chain morphologies generated as a result of compaction.

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Year:  2006        PMID: 17254757     DOI: 10.1016/j.colsurfb.2006.10.040

Source DB:  PubMed          Journal:  Colloids Surf B Biointerfaces        ISSN: 0927-7765            Impact factor:   5.268


  5 in total

1.  Coupling between Histone Conformations and DNA Geometry in Nucleosomes on a Microsecond Timescale: Atomistic Insights into Nucleosome Functions.

Authors:  Alexey K Shaytan; Grigoriy A Armeev; Alexander Goncearenco; Victor B Zhurkin; David Landsman; Anna R Panchenko
Journal:  J Mol Biol       Date:  2015-12-14       Impact factor: 5.469

2.  Electrostatic origin of salt-induced nucleosome array compaction.

Authors:  Nikolay Korolev; Abdollah Allahverdi; Ye Yang; Yanping Fan; Alexander P Lyubartsev; Lars Nordenskiöld
Journal:  Biophys J       Date:  2010-09-22       Impact factor: 4.033

3.  Why double-stranded RNA resists condensation.

Authors:  Igor S Tolokh; Suzette A Pabit; Andrea M Katz; Yujie Chen; Aleksander Drozdetski; Nathan Baker; Lois Pollack; Alexey V Onufriev
Journal:  Nucleic Acids Res       Date:  2014-08-14       Impact factor: 16.971

4.  Single-molecule compaction of megabase-long chromatin molecules by multivalent cations.

Authors:  Anatoly Zinchenko; Nikolay V Berezhnoy; Sai Wang; William M Rosencrans; Nikolay Korolev; Johan R C van der Maarel; Lars Nordenskiöld
Journal:  Nucleic Acids Res       Date:  2018-01-25       Impact factor: 16.971

5.  A universal description for the experimental behavior of salt-(in)dependent oligocation-induced DNA condensation.

Authors:  Nikolay Korolev; Nikolay V Berezhnoy; Khee Dong Eom; James P Tam; Lars Nordenskiöld
Journal:  Nucleic Acids Res       Date:  2009-11       Impact factor: 16.971

  5 in total

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