Literature DB >> 17243791

Fly-casting in protein-DNA binding: frustration between protein folding and electrostatics facilitates target recognition.

Yaakov Levy1, José N Onuchic, Peter G Wolynes.   

Abstract

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Year:  2007        PMID： 17243791     DOI： 10.1021/ja065531n

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN： 0002-7863            Impact factor:   15.419


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  89 in total

1.  Interplay between minor and major groove-binding transcription factors Sox2 and Oct1 in translocation on DNA studied by paramagnetic and diamagnetic NMR.

Authors:  Yuki Takayama; G Marius Clore
Journal:  J Biol Chem       Date:  2012-03-06       Impact factor: 5.157

2.  Facilitated DNA search by multidomain transcription factors: cross talk via a flexible linker.

Authors:  Dana Vuzman; Michal Polonsky; Yaakov Levy
Journal:  Biophys J       Date:  2010-08-09       Impact factor: 4.033

3.  Net charge per residue modulates conformational ensembles of intrinsically disordered proteins.

Authors:  Albert H Mao; Scott L Crick; Andreas Vitalis; Caitlin L Chicoine; Rohit V Pappu
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-19       Impact factor: 11.205

4.  DNA search efficiency is modulated by charge composition and distribution in the intrinsically disordered tail.

Authors:  Dana Vuzman; Yaakov Levy
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-15       Impact factor: 11.205

5.  Functional role of ribosomal signatures.

Authors:  Ke Chen; John Eargle; Krishnarjun Sarkar; Martin Gruebele; Zaida Luthey-Schulten
Journal:  Biophys J       Date:  2010-12-15       Impact factor: 4.033

6.  Electrostatically accelerated coupled binding and folding of intrinsically disordered proteins.

Authors:  Debabani Ganguly; Steve Otieno; Brett Waddell; Luigi Iconaru; Richard W Kriwacki; Jianhan Chen
Journal:  J Mol Biol       Date:  2012-06-19       Impact factor: 5.469

7.  Quantitative analysis of multisite protein-ligand interactions by NMR: binding of intrinsically disordered p53 transactivation subdomains with the TAZ2 domain of CBP.

Authors:  Munehito Arai; Josephine C Ferreon; Peter E Wright
Journal:  J Am Chem Soc       Date:  2012-02-15       Impact factor: 15.419

8.  Mechanical control of the directional stepping dynamics of the kinesin motor.

Authors:  Changbong Hyeon; José N Onuchic
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-24       Impact factor: 11.205

9.  PAGE4 and Conformational Switching: Insights from Molecular Dynamics Simulations and Implications for Prostate Cancer.

Authors:  Xingcheng Lin; Susmita Roy; Mohit Kumar Jolly; Federico Bocci; Nicholas P Schafer; Min-Yeh Tsai; Yihong Chen; Yanan He; Alexander Grishaev; Keith Weninger; John Orban; Prakash Kulkarni; Govindan Rangarajan; Herbert Levine; José N Onuchic
Journal:  J Mol Biol       Date:  2018-06-05       Impact factor: 5.469

10.  Effects of electrostatic interactions on ligand dissociation kinetics.

Authors:  Aykut Erbaş; Monica Olvera de la Cruz; John F Marko
Journal:  Phys Rev E       Date:  2018-02       Impact factor: 2.529
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