Literature DB >> 17239343

Assessing antifreeze activity of AFGP 8 using domain recognition software.

Jessica Jackman1, Matthew Noestheden, Doug Moffat, John P Pezacki, Scott Findlay, Robert N Ben.   

Abstract

Domain recognition software was employed to assess recrystallization-inhibition (RI) activity as an index of antifreeze potential. This represents a key step in the development of a high-throughput analysis for RI activity. Analysis of measurement error indicates an average coefficient of variation for individual crystals of about 8%, which is very small in relation to other sources of variation. Our analysis demonstrates an inverse correlation between AFGP 8 concentration and average crystal size with consistently small, but detectable differences in average crystal size at the edge and centre of the ice wafer. Sensitivity analysis using Monte Carlo re-sampling methods indicate that measuring of 12-15 crystals per field of view are sufficient to obtain accurate estimates of the first two moments (mean and variance) of the crystal size distribution, thereby greatly reducing the time required to assess recrystallization activity. These results suggest that this method has considerable potential for high-throughput analysis of RI activity.

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Year:  2007        PMID: 17239343     DOI: 10.1016/j.bbrc.2006.12.225

Source DB:  PubMed          Journal:  Biochem Biophys Res Commun        ISSN: 0006-291X            Impact factor:   3.575


  12 in total

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Review 4.  Marine Antifreeze Proteins: Structure, Function, and Application to Cryopreservation as a Potential Cryoprotectant.

Authors:  Hak Jun Kim; Jun Hyuck Lee; Young Baek Hur; Chang Woo Lee; Sun-Ha Park; Bon-Won Koo
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5.  O-Aryl-Glycoside Ice Recrystallization Inhibitors as Novel Cryoprotectants: A Structure-Function Study.

Authors:  Chantelle J Capicciotti; Ross S Mancini; Tracey R Turner; Toshie Koyama; Matthew G Alteen; Malay Doshi; Takaaki Inada; Jason P Acker; Robert N Ben
Journal:  ACS Omega       Date:  2016-10-24

6.  Carbohydrate-based ice recrystallization inhibitors increase infectivity and thermostability of viral vectors.

Authors:  Shahrokh M Ghobadloo; Anna K Balcerzak; Ana Gargaun; Darija Muharemagic; Gleb G Mironov; Chantelle J Capicciotti; Jennie G Briard; Robert N Ben; Maxim V Berezovski
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7.  Small molecule ice recrystallization inhibitors mitigate red blood cell lysis during freezing, transient warming and thawing.

Authors:  Jennie G Briard; Jessica S Poisson; Tracey R Turner; Chantelle J Capicciotti; Jason P Acker; Robert N Ben
Journal:  Sci Rep       Date:  2016-03-29       Impact factor: 4.379

8.  QSAR Accelerated Discovery of Potent Ice Recrystallization Inhibitors.

Authors:  Jennie G Briard; Michael Fernandez; Phil De Luna; Tom K Woo; Robert N Ben
Journal:  Sci Rep       Date:  2016-05-24       Impact factor: 4.379

9.  Gold Nanoparticle Aggregation as a Probe of Antifreeze (Glyco) Protein-Inspired Ice Recrystallization Inhibition and Identification of New IRI Active Macromolecules.

Authors:  Daniel E Mitchell; Thomas Congdon; Alison Rodger; Matthew I Gibson
Journal:  Sci Rep       Date:  2015-10-26       Impact factor: 4.379

10.  Effect of Marine-Derived Ice-Binding Proteins on the Cryopreservation of Marine Microalgae.

Authors:  Hak Jun Kim; Bon-Won Koo; Doa Kim; Ye Seul Seo; Yoon Kwon Nam
Journal:  Mar Drugs       Date:  2017-12-01       Impact factor: 5.118

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