Literature DB >> 17238361

Exploiting semantic relations for literature-based discovery.

Dimitar Hristovski1, Carol Friedman, Thomas C Rindflesch, Borut Peterlin.   

Abstract

We propose using semantic predications to enhance literature-based discovery (LBD) systems, which currently depend exclusively on co-occurrence of words or concepts in target documents. In this paper, the predications, which are produced by the combined application of two natural language processing systems, BioMedLEE and SemRep, are coupled with an LBD system BITOLA. Initial experiments suggest this approach can uncover new associations that were not possible using previous methods.

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Year:  2006        PMID： 17238361      PMCID： PMC1839258     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN： 1559-4076


  13 in total

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Authors:  A R Aronson
Journal:  Proc AMIA Symp       Date:  2001

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Authors:  D Hristovski; J Stare; B Peterlin; S Dzeroski
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Authors:  Thomas C Rindflesch; Marcelo Fiszman
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Authors:  Carol Friedman; Lyudmila Shagina; Yves Lussier; George Hripcsak
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6.  Using literature-based discovery to identify disease candidate genes.

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7.  Fish oil, Raynaud's syndrome, and undiscovered public knowledge.

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8.  Huntington's disease of the endocrine pancreas: insulin deficiency and diabetes mellitus due to impaired insulin gene expression.

Authors:  Ole A Andreassen; Alpaslan Dedeoglu; Violeta Stanojevic; Duncan B Hughes; Susan E Browne; Colin A Leech; Robert J Ferrante; Joel F Habener; M Flint Beal; Melissa K Thomas
Journal:  Neurobiol Dis       Date:  2002-12       Impact factor: 5.996

Review 9.  Neurodegenerative disorders associated with diabetes mellitus.

Authors:  Michael Ristow
Journal:  J Mol Med (Berl)       Date:  2004-06-03       Impact factor: 4.599

10.  A knowledgebase system to enhance scientific discovery: Telemakus.

Authors:  Sherrilynne S Fuller; Debra Revere; Paul F Bugni; George M Martin
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  59 in total

1.  Graph-based methods for discovery browsing with semantic predications.

Authors:  Bartłomiej Wilkowski; Marcelo Fiszman; Christopher M Miller; Dimitar Hristovski; Sivaram Arabandi; Graciela Rosemblat; Thomas C Rindflesch
Journal:  AMIA Annu Symp Proc       Date:  2011-10-22

2.  Reasoning with Vectors: A Continuous Model for Fast Robust Inference.

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Journal:  Log J IGPL       Date:  2014-11-19       Impact factor: 0.861

3.  Bridging semantics and syntax with graph algorithms-state-of-the-art of extracting biomedical relations.

Authors:  Yuan Luo; Özlem Uzuner; Peter Szolovits
Journal:  Brief Bioinform       Date:  2016-02-05       Impact factor: 11.622

Review 4.  Frontiers of biomedical text mining: current progress.

Authors:  Pierre Zweigenbaum; Dina Demner-Fushman; Hong Yu; Kevin B Cohen
Journal:  Brief Bioinform       Date:  2007-10-30       Impact factor: 11.622

5.  Using the literature-based discovery paradigm to investigate drug mechanisms.

Authors:  Caroline B Ahlers; Dimitar Hristovski; Halil Kilicoglu; Thomas C Rindflesch
Journal:  AMIA Annu Symp Proc       Date:  2007-10-11

Review 6.  Recent progress in automatically extracting information from the pharmacogenomic literature.

Authors:  Yael Garten; Adrien Coulet; Russ B Altman
Journal:  Pharmacogenomics       Date:  2010-10       Impact factor: 2.533

7.  A flexible framework for deriving assertions from electronic medical records.

Authors:  Kirk Roberts; Sanda M Harabagiu
Journal:  J Am Med Inform Assoc       Date:  2011-07-01       Impact factor: 4.497

8.  Automatic lymphoma classification with sentence subgraph mining from pathology reports.

Authors:  Yuan Luo; Aliyah R Sohani; Ephraim P Hochberg; Peter Szolovits
Journal:  J Am Med Inform Assoc       Date:  2014-01-15       Impact factor: 4.497

9.  Semantic MEDLINE for discovery browsing: using semantic predications and the literature-based discovery paradigm to elucidate a mechanism for the obesity paradox.

Authors:  Michael J Cairelli; Christopher M Miller; Marcelo Fiszman; T Elizabeth Workman; Thomas C Rindflesch
Journal:  AMIA Annu Symp Proc       Date:  2013-11-16

10.  Discovering discovery patterns with Predication-based Semantic Indexing.

Authors:  Trevor Cohen; Dominic Widdows; Roger W Schvaneveldt; Peter Davies; Thomas C Rindflesch
Journal:  J Biomed Inform       Date:  2012-07-26       Impact factor: 6.317
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