Literature DB >> 17238307

Finding temporal order in discharge summaries.

Philip Bramsen1, Pawan Deshpande, Yoong Keok Lee, Regina Barzilay.   

Abstract

A method for automatic analysis of time-oriented clinical narratives would be of significant practical import for medical decision making, data modeling and biomedical research. This paper proposes a robust corpus-based approach for temporal analysis of medical discharge summaries. We characterize temporal organization of clinical narratives in terms of temporal segments and their ordering. We consider a temporal segment to be a fragment of text that does not exhibit abrupt changes in temporal focus. Our method derives temporal order based on a range of linguistic and contextual features that are integrated in a supervised machine-learning framework. Our learning method achieves 83% F-measure in tempo-ral segmentation, and 78.3% accuracy in inferring pairwise temporal relations.

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Mesh:

Year:  2006        PMID: 17238307      PMCID: PMC1839632     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  2 in total

1.  System architecture for temporal information extraction, representation and reasoning in clinical narrative reports.

Authors:  Li Zhou; Carol Friedman; Simon Parsons; George Hripcsak
Journal:  AMIA Annu Symp Proc       Date:  2005

Review 2.  Temporal reasoning and temporal data maintenance in medicine: issues and challenges.

Authors:  C Combi; Y Shahar
Journal:  Comput Biol Med       Date:  1997-09       Impact factor: 4.589

  2 in total
  12 in total

1.  Named entity recognition of follow-up and time information in 20,000 radiology reports.

Authors:  Yan Xu; Junichi Tsujii; Eric I-Chao Chang
Journal:  J Am Med Inform Assoc       Date:  2012-07-06       Impact factor: 4.497

2.  Lancet: a high precision medication event extraction system for clinical text.

Authors:  Zuofeng Li; Feifan Liu; Lamont Antieau; Yonggang Cao; Hong Yu
Journal:  J Am Med Inform Assoc       Date:  2010 Sep-Oct       Impact factor: 4.497

3.  Adapting existing natural language processing resources for cardiovascular risk factors identification in clinical notes.

Authors:  Abdulrahman Khalifa; Stéphane Meystre
Journal:  J Biomed Inform       Date:  2015-08-28       Impact factor: 6.317

4.  The evaluation of a temporal reasoning system in processing clinical discharge summaries.

Authors:  Li Zhou; Simon Parsons; George Hripcsak
Journal:  J Am Med Inform Assoc       Date:  2007-10-18       Impact factor: 4.497

5.  The role of fine-grained annotations in supervised recognition of risk factors for heart disease from EHRs.

Authors:  Kirk Roberts; Sonya E Shooshan; Laritza Rodriguez; Swapna Abhyankar; Halil Kilicoglu; Dina Demner-Fushman
Journal:  J Biomed Inform       Date:  2015-06-26       Impact factor: 6.317

6.  A Preliminary Characterization of Canonicalized and Non-Canonicalized Section Headers Across Variable Clinical Note Types.

Authors:  Junjie Wang; Shun Yu; Anahita Davoudi; Danielle L Mowery
Journal:  AMIA Annu Symp Proc       Date:  2021-01-25

7.  Temporal Annotation in the Clinical Domain.

Authors:  William F Styler; Steven Bethard; Sean Finan; Martha Palmer; Sameer Pradhan; Piet C de Groen; Brad Erickson; Timothy Miller; Chen Lin; Guergana Savova; James Pustejovsky
Journal:  Trans Assoc Comput Linguist       Date:  2014-04

8.  TN-TIES: A system for extracting temporal information from emergency department triage notes.

Authors:  Ann K Irvine; Stephanie W Haas; Tessa Sullivan
Journal:  AMIA Annu Symp Proc       Date:  2008-11-06

9.  Annotating temporal information in clinical narratives.

Authors:  Weiyi Sun; Anna Rumshisky; Ozlem Uzuner
Journal:  J Biomed Inform       Date:  2013-07-19       Impact factor: 6.317

10.  Temporal ordering of cancer microarray data through a reinforcement learning based approach.

Authors:  Gabriela Czibula; Iuliana M Bocicor; Istvan-Gergely Czibula
Journal:  PLoS One       Date:  2013-04-02       Impact factor: 3.240

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