Literature DB >> 17238295

Methodology to build medical ontology from textual resources.

Audrey Baneyx1, Jean Charlet, Marie-Christine Jaulent.   

Abstract

In the medical field, it is now established that the maintenance of unambiguous thesauri goes through ontologies. Our research task is to help pneumologists code acts and diagnoses with a software that represents medical knowledge through a domain ontology. In this paper, we describe our general methodology aimed at knowledge engineers in order to build various types of medical ontologies based on terminology extraction from texts. The hypothesis is to apply natural language processing tools to textual patient discharge summaries to develop the resources needed to build an ontology in pneumology. Results indicate that the joint use of distributional analysis and lexico-syntactic patterns performed satisfactorily for building such ontologies.

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Mesh:

Year:  2006        PMID: 17238295      PMCID: PMC1839277     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  7 in total

1.  Evaluation of coding data quality of the HCUP National Inpatient Sample.

Authors:  C L Berthelsen
Journal:  Top Health Inf Manage       Date:  2000-11

2.  Terminology extraction from text to build an ontology in surgical intensive care.

Authors:  Sophie Le Moigno; Jean Charlet; Didier Bourigault; Patrice Degoulet; Marie-Christine Jaulent
Journal:  Proc AMIA Symp       Date:  2002

3.  Automated encoding of clinical documents based on natural language processing.

Authors:  Carol Friedman; Lyudmila Shagina; Yves Lussier; George Hripcsak
Journal:  J Am Med Inform Assoc       Date:  2004-06-07       Impact factor: 4.497

4.  Thesauri and formal classifications: terminologies for people and machines.

Authors:  A L Rector
Journal:  Methods Inf Med       Date:  1998-11       Impact factor: 2.176

5.  Compositional concept representation using SNOMED: towards further convergence of clinical terminologies.

Authors:  K A Spackman; K E Campbell
Journal:  Proc AMIA Symp       Date:  1998

6.  From text to knowledge: a unifying document-centered view of analyzed medical language.

Authors:  P Zweigenbaum; J Bouaud; B Bachimont; J Charlet; B Séroussi; J F Boisvieux
Journal:  Methods Inf Med       Date:  1998-11       Impact factor: 2.176

7.  A Terminology Server for medical language and medical information systems.

Authors:  A L Rector; W D Solomon; W A Nowlan; T W Rush; P E Zanstra; W M Claassen
Journal:  Methods Inf Med       Date:  1995-03       Impact factor: 2.176

  7 in total
  3 in total

Review 1.  Bioinformatics and cancer research: building bridges for translational research.

Authors:  Gonzalo Gómez-López; Alfonso Valencia
Journal:  Clin Transl Oncol       Date:  2008-02       Impact factor: 3.405

2.  OntoCAT--simple ontology search and integration in Java, R and REST/JavaScript.

Authors:  Tomasz Adamusiak; Tony Burdett; Natalja Kurbatova; K Joeri van der Velde; Niran Abeygunawardena; Despoina Antonakaki; Misha Kapushesky; Helen Parkinson; Morris A Swertz
Journal:  BMC Bioinformatics       Date:  2011-05-29       Impact factor: 3.307

3.  Automated concept and relationship extraction for the semi-automated ontology management (SEAM) system.

Authors:  Kristina Doing-Harris; Yarden Livnat; Stephane Meystre
Journal:  J Biomed Semantics       Date:  2015-04-02
  3 in total

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