Literature DB >> 17238250

Radial clustergrams: visualizing the aggregate properties of hierarchical clusters.

Dimitris K Agrafiotis1, Deepak Bandyopadhyay, Michael Farnum.   

Abstract

A new radial space-filling method for visualizing cluster hierarchies is presented. The method, referred to as a radial clustergram, arranges the clusters into a series of layers, each representing a different level of the tree. It uses adjacency of nodes instead of links to represent parent-child relationships and allocates sufficient screen real estate to each node to allow effective visualization of cluster properties through color-coding. Radial clustergrams combine the most appealing features of other cluster visualization techniques but avoid their pitfalls. Compared to classical dendrograms and hyperbolic trees, they make much more efficient use of space; compared to treemaps, they are more effective in conveying hierarchical structure and displaying properties of nodes higher in the tree. A fisheye lens is used to focus on areas of interest, without losing sight of the global context. The utility of the method is demonstrated using examples from the fields of molecular diversity and conformational analysis.

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Year:  2007        PMID: 17238250     DOI: 10.1021/ci600427x

Source DB:  PubMed          Journal:  J Chem Inf Model        ISSN: 1549-9596            Impact factor:   4.956


  2 in total

1.  A specific mechanism for nonspecific activation in reporter-gene assays.

Authors:  Douglas S Auld; Natasha Thorne; Dac-Trung Nguyen; James Inglese
Journal:  ACS Chem Biol       Date:  2008-07-01       Impact factor: 5.100

2.  2D depiction of fragment hierarchies.

Authors:  Alex M Clark
Journal:  J Chem Inf Model       Date:  2010-01       Impact factor: 4.956

  2 in total

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