Literature DB >> 17234378

The three classes of triplet profiles of natural genomes.

Guenter Albrecht-Buehler1.   

Abstract

Based on the huge variety of different genomes, one may expect a correspondingly large variety of the frequency distribution of their trinucleotides ("triplet profiles"). Yet, this article reports the unexpected finding that there are essentially only three kinds of triplet profiles among the large number of genomes examined here. None of the classes included random profiles, all of them contained members from vastly different taxa and species. Since the three classes of genomes do not reflect the phylogeny of their member organisms, I propose that these classes may reflect species-independent mechanisms of genome evolution.

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Year:  2007        PMID: 17234378     DOI: 10.1016/j.ygeno.2006.12.009

Source DB:  PubMed          Journal:  Genomics        ISSN: 0888-7543            Impact factor:   5.736


  3 in total

1.  Prediction of plant promoters based on hexamers and random triplet pair analysis.

Authors:  A K M Azad; Saima Shahid; Nasimul Noman; Hyunju Lee
Journal:  Algorithms Mol Biol       Date:  2011-06-28       Impact factor: 1.405

2.  Two common profiles exist for genomic oligonucleotide frequencies.

Authors:  Shang-Hong Zhang; Lei Wang
Journal:  BMC Res Notes       Date:  2012-11-17

3.  Properties and distribution of pure GA-sequences of mammalian genomes.

Authors:  Guenter Albrecht-Buehler
Journal:  PLoS One       Date:  2008-11-27       Impact factor: 3.240

  3 in total

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