Literature DB >> 17233561

Clustering methods for microarray gene expression data.

Nabil Belacel1, Qian Wang, Miroslava Cuperlovic-Culf.   

Abstract

Within the field of genomics, microarray technologies have become a powerful technique for simultaneously monitoring the expression patterns of thousands of genes under different sets of conditions. A main task now is to propose analytical methods to identify groups of genes that manifest similar expression patterns and are activated by similar conditions. The corresponding analysis problem is to cluster multi-condition gene expression data. The purpose of this paper is to present a general view of clustering techniques used in microarray gene expression data analysis.

Mesh:

Year:  2006        PMID: 17233561     DOI: 10.1089/omi.2006.10.507

Source DB:  PubMed          Journal:  OMICS        ISSN: 1536-2310


  16 in total

1.  Comparing the performance of biomedical clustering methods.

Authors:  Christian Wiwie; Jan Baumbach; Richard Röttger
Journal:  Nat Methods       Date:  2015-09-21       Impact factor: 28.547

2.  Large-scale label-free quantitative proteomics of the pea aphid-Buchnera symbiosis.

Authors:  Anton Poliakov; Calum W Russell; Lalit Ponnala; Harold J Hoops; Qi Sun; Angela E Douglas; Klaas J van Wijk
Journal:  Mol Cell Proteomics       Date:  2011-03-18       Impact factor: 5.911

3.  Nucleoid-enriched proteomes in developing plastids and chloroplasts from maize leaves: a new conceptual framework for nucleoid functions.

Authors:  Wojciech Majeran; Giulia Friso; Yukari Asakura; Xian Qu; Mingshu Huang; Lalit Ponnala; Kenneth P Watkins; Alice Barkan; Klaas J van Wijk
Journal:  Plant Physiol       Date:  2011-11-07       Impact factor: 8.340

4.  Using a state-space model and location analysis to infer time-delayed regulatory networks.

Authors:  Chushin Koh; Fang-Xiang Wu; Gopalan Selvaraj; Anthony J Kusalik
Journal:  EURASIP J Bioinform Syst Biol       Date:  2009-10-15

5.  CAMPAIGN: an open-source library of GPU-accelerated data clustering algorithms.

Authors:  Kai J Kohlhoff; Marc H Sosnick; William T Hsu; Vijay S Pande; Russ B Altman
Journal:  Bioinformatics       Date:  2011-06-27       Impact factor: 6.937

6.  Structural and metabolic transitions of C4 leaf development and differentiation defined by microscopy and quantitative proteomics in maize.

Authors:  Wojciech Majeran; Giulia Friso; Lalit Ponnala; Brian Connolly; Mingshu Huang; Edwin Reidel; Cankui Zhang; Yukari Asakura; Nazmul H Bhuiyan; Qi Sun; Robert Turgeon; Klaas J van Wijk
Journal:  Plant Cell       Date:  2010-11-16       Impact factor: 11.277

7.  A semi-parametric Bayesian model for unsupervised differential co-expression analysis.

Authors:  Johannes M Freudenberg; Siva Sivaganesan; Michael Wagner; Mario Medvedovic
Journal:  BMC Bioinformatics       Date:  2010-05-07       Impact factor: 3.169

8.  A Nonparametric Bayesian Model for Local Clustering with Application to Proteomics.

Authors:  Juhee Lee; Peter Müller; Yitan Zhu; Yuan Ji
Journal:  J Am Stat Assoc       Date:  2013-01-01       Impact factor: 5.033

9.  BEYOND TEXT: USING ARRAYS TO REPRESENT AND ANALYZE ETHNOGRAPHIC DATA.

Authors:  Corey M Abramson; Daniel Dohan
Journal:  Sociol Methodol       Date:  2015-04-17

Review 10.  Methods for transcriptomic analyses of the porcine host immune response: application to Salmonella infection using microarrays.

Authors:  C K Tuggle; S M D Bearson; J J Uthe; T H Huang; O P Couture; Y F Wang; D Kuhar; J K Lunney; V Honavar
Journal:  Vet Immunol Immunopathol       Date:  2010-10-14       Impact factor: 2.046

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.