Literature DB >> 17227386

Temperature compensation through systems biology.

Peter Ruoff1, Maxim Zakhartsev, Hans V Westerhoff.   

Abstract

Temperature has a strong influence on most individual biochemical reactions. Despite this, many organisms have the remarkable ability to keep certain physiological fluxes approximately constant over an extended temperature range. In this study, we show how temperature compensation can be considered as a pathway phenomenon rather than the result of a single-enzyme property. Using metabolic control analysis, it is possible to identify reaction networks that exhibit temperature compensation. Because most activation enthalpies are positive, temperature compensation of a flux can occur when certain control coefficients are negative. This can be achieved in networks with branching reactions or if the first irreversible reaction is regulated by a feedback loop. Hierarchical control analysis shows that networks that are dynamic through regulated gene expression or signal transduction may offer additional possibilities to bring the apparent activation enthalpies close to zero and lead to temperature compensation. A calorimetric experiment with yeast provides evidence that such a dynamic temperature adaptation can actually occur.

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Year:  2007        PMID: 17227386     DOI: 10.1111/j.1742-4658.2007.05641.x

Source DB:  PubMed          Journal:  FEBS J        ISSN: 1742-464X            Impact factor:   5.542


  14 in total

1.  Generic temperature compensation of biological clocks by autonomous regulation of catalyst concentration.

Authors:  Tetsuhiro S Hatakeyama; Kunihiko Kaneko
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-07       Impact factor: 11.205

2.  The control of the controller: molecular mechanisms for robust perfect adaptation and temperature compensation.

Authors:  Xiao Yu Ni; Tormod Drengstig; Peter Ruoff
Journal:  Biophys J       Date:  2009-09-02       Impact factor: 4.033

3.  Adaptive dynamics with a single two-state protein.

Authors:  Attila Csikász-Nagy; Orkun S Soyer
Journal:  J R Soc Interface       Date:  2008-08-06       Impact factor: 4.118

4.  Many parameter sets in a multicompartment model oscillator are robust to temperature perturbations.

Authors:  Jonathan S Caplan; Alex H Williams; Eve Marder
Journal:  J Neurosci       Date:  2014-04-02       Impact factor: 6.167

5.  Simulating dark expressions and interactions of frq and wc-1 in the Neurospora circadian clock.

Authors:  Christian I Hong; Ingunn W Jolma; Jennifer J Loros; Jay C Dunlap; Peter Ruoff
Journal:  Biophys J       Date:  2007-10-26       Impact factor: 4.033

Review 6.  Protein sequestration versus Hill-type repression in circadian clock models.

Authors:  Jae Kyoung Kim
Journal:  IET Syst Biol       Date:  2016-08       Impact factor: 1.615

7.  Modeling indicates degradation of mRNA and protein as a potential regulation mechanisms during cold acclimation.

Authors:  Maria Krantz; Julia Legen; Yang Gao; Reimo Zoschke; Christian Schmitz-Linneweber; Edda Klipp
Journal:  J Plant Res       Date:  2021-04-23       Impact factor: 2.629

8.  Comprehensive modelling of the Neurospora circadian clock and its temperature compensation.

Authors:  Yu-Yao Tseng; Suzanne M Hunt; Christian Heintzen; Susan K Crosthwaite; Jean-Marc Schwartz
Journal:  PLoS Comput Biol       Date:  2012-03-29       Impact factor: 4.475

9.  Stochastic models of cellular circadian rhythms in plants help to understand the impact of noise on robustness and clock structure.

Authors:  Maria L Guerriero; Ozgur E Akman; Gerben van Ooijen
Journal:  Front Plant Sci       Date:  2014-10-21       Impact factor: 5.753

10.  Isoform switching facilitates period control in the Neurospora crassa circadian clock.

Authors:  Ozgur E Akman; James C W Locke; Sanyi Tang; Isabelle Carré; Andrew J Millar; David A Rand
Journal:  Mol Syst Biol       Date:  2008-02-12       Impact factor: 11.429

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