Literature DB >> 17223545

Perspectives on mechanisms of gene regulation by 1,25-dihydroxyvitamin D3 and its receptor.

J Wesley Pike1, Mark B Meyer, Makoto Watanuki, Sungtae Kim, Lee A Zella, Jackie A Fretz, Miwa Yamazaki, Nirupama K Shevde.   

Abstract

1,25-Dihydroxyvitamin D(3) (1,25(OH)(2)D(3)) functions as a systemic signal in vertebrate organisms to control the expression of genes whose products are vital to the maintenance of calcium and phosphorus homeostasis. This regulatory capability is mediated by the vitamin D receptor (VDR) which localizes at DNA sites adjacent to the promoter regions of target genes and initiates the complex events necessary for transcriptional modulation. Recent investigations using chromatin immunoprecipitation techniques combined with various gene scanning methodologies have revealed new insights into the location, structure and function of these regulatory regions. In the studies reported here, we utilized the above techniques to identify key enhancer regions that mediate the actions of vitamin D on the calcium ion channel gene TRPV6, the catabolic bone calcium-mobilizing factor gene RankL and the bone anabolic Wnt signaling pathway co-receptor gene LRP5. We also resolve the mechanism whereby 1,25(OH)(2)D(3) autoregulates the expression of its own receptor. The results identify new features of vitamin D-regulated enhancers, including their locations at gene loci, the structure of the VDR binding sites located within, their modular nature and their functional activity. Our studies suggest that vitamin D enhancers regulate the expression of key target genes by facilitating the recruitment of both the basal transcriptional machinery as well as the protein complexes necessary for altered gene expression.

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Year:  2007        PMID: 17223545      PMCID: PMC1868541          DOI: 10.1016/j.jsbmb.2006.12.050

Source DB:  PubMed          Journal:  J Steroid Biochem Mol Biol        ISSN: 0960-0760            Impact factor:   4.292


  31 in total

1.  Genome-wide location and function of DNA binding proteins.

Authors:  B Ren; F Robert; J J Wyrick; O Aparicio; E G Jennings; I Simon; J Zeitlinger; J Schreiber; N Hannett; E Kanin; T L Volkert; C J Wilson; S P Bell; R A Young
Journal:  Science       Date:  2000-12-22       Impact factor: 47.728

Review 2.  The coregulator exchange in transcriptional functions of nuclear receptors.

Authors:  C K Glass; M G Rosenfeld
Journal:  Genes Dev       Date:  2000-01-15       Impact factor: 11.361

Review 3.  Molecular nature of the vitamin D receptor and its role in regulation of gene expression.

Authors:  P W Jurutka; G K Whitfield; J C Hsieh; P D Thompson; C A Haussler; M R Haussler
Journal:  Rev Endocr Metab Disord       Date:  2001-04       Impact factor: 6.514

Review 4.  Combinatorial control of gene expression by nuclear receptors and coregulators.

Authors:  Neil J McKenna; Bert W O'Malley
Journal:  Cell       Date:  2002-02-22       Impact factor: 41.582

5.  Characterizing transcription factor binding sites using formaldehyde crosslinking and immunoprecipitation.

Authors:  Julie Wells; Peggy J Farnham
Journal:  Methods       Date:  2002-01       Impact factor: 3.608

6.  High bone density due to a mutation in LDL-receptor-related protein 5.

Authors:  Lynn M Boyden; Junhao Mao; Joseph Belsky; Lyle Mitzner; Anita Farhi; Mary A Mitnick; Dianqing Wu; Karl Insogna; Richard P Lifton
Journal:  N Engl J Med       Date:  2002-05-16       Impact factor: 91.245

7.  Formation of the androgen receptor transcription complex.

Authors:  Yongfeng Shang; Molly Myers; Myles Brown
Journal:  Mol Cell       Date:  2002-03       Impact factor: 17.970

8.  Electrostatic modulation in steroid receptor recruitment of LXXLL and FXXLF motifs.

Authors:  Bin He; Elizabeth M Wilson
Journal:  Mol Cell Biol       Date:  2003-03       Impact factor: 4.272

9.  1,25-Dihydroxyvitamin D3 regulates the expression of low-density lipoprotein receptor-related protein 5 via deoxyribonucleic acid sequence elements located downstream of the start site of transcription.

Authors:  Jackie A Fretz; Lee A Zella; Sungtae Kim; Nirupama K Shevde; J Wesley Pike
Journal:  Mol Endocrinol       Date:  2006-04-13

10.  Transcriptional regulatory networks in Saccharomyces cerevisiae.

Authors:  Tong Ihn Lee; Nicola J Rinaldi; François Robert; Duncan T Odom; Ziv Bar-Joseph; Georg K Gerber; Nancy M Hannett; Christopher T Harbison; Craig M Thompson; Itamar Simon; Julia Zeitlinger; Ezra G Jennings; Heather L Murray; D Benjamin Gordon; Bing Ren; John J Wyrick; Jean-Bosco Tagne; Thomas L Volkert; Ernest Fraenkel; David K Gifford; Richard A Young
Journal:  Science       Date:  2002-10-25       Impact factor: 47.728

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  24 in total

Review 1.  Immunomodulation by vitamin D: implications for TB.

Authors:  Rene F Chun; John S Adams; Martin Hewison
Journal:  Expert Rev Clin Pharmacol       Date:  2011-09       Impact factor: 5.045

2.  Genome-wide analysis of the VDR/RXR cistrome in osteoblast cells provides new mechanistic insight into the actions of the vitamin D hormone.

Authors:  Mark B Meyer; Paul D Goetsch; J Wesley Pike
Journal:  J Steroid Biochem Mol Biol       Date:  2010-02-18       Impact factor: 4.292

3.  Emerging regulatory paradigms for control of gene expression by 1,25-dihydroxyvitamin D3.

Authors:  J Wesley Pike; Mark B Meyer; Melissa L Martowicz; Kathleen A Bishop; Seong Min Lee; Robert D Nerenz; Paul D Goetsch
Journal:  J Steroid Biochem Mol Biol       Date:  2010-03-07       Impact factor: 4.292

4.  A molecular description of ligand binding to the two overlapping binding pockets of the nuclear vitamin D receptor (VDR): structure-function implications.

Authors:  Mathew T Mizwicki; Danusa Menegaz; Sepideh Yaghmaei; Helen L Henry; Anthony W Norman
Journal:  J Steroid Biochem Mol Biol       Date:  2010-04-14       Impact factor: 4.292

5.  A downstream intergenic cluster of regulatory enhancers contributes to the induction of CYP24A1 expression by 1alpha,25-dihydroxyvitamin D3.

Authors:  Mark B Meyer; Paul D Goetsch; J Wesley Pike
Journal:  J Biol Chem       Date:  2010-03-17       Impact factor: 5.157

6.  MKP-1 is essential for canonical vitamin D-induced signaling through nuclear import and regulates RANKL expression and function.

Authors:  Alfred C Griffin; Michael J Kern; Keith L Kirkwood
Journal:  Mol Endocrinol       Date:  2012-08-16

7.  Vitamin D receptor polymorphisms and expression profile in rheumatoid arthritis Brazilian patients.

Authors:  Catarina Addobbati Jordão Cavalcanti; Jaqueline de Azevêdo Silva; Will de Barros Pita; Tiago Degani Veit; Odirlei Andre Monticielo; Ricardo Machado Xavier; João Carlos Tavares Brenol; Cleiton Viegas Brenol; Thiago Sotero Fragoso; Alexandre Domingues Barbosa; Ângela Luiza Branco Pinto Duarte; Renê Donizeti Ribeiro Oliveira; Paulo Louzada-Júnior; Eduardo Antônio Donadi; Sergio Crovella; José Artur Bogo Chies; Paula Sandrin-Garcia
Journal:  Mol Biol Rep       Date:  2015-12-19       Impact factor: 2.316

8.  Serum vitamin D and breast density in breast cancer survivors.

Authors:  Marian L Neuhouser; Leslie Bernstein; Bruce W Hollis; Liren Xiao; Anita Ambs; Kathy Baumgartner; Richard Baumgartner; Anne McTiernan; Rachel Ballard-Barbash
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2010-01-19       Impact factor: 4.254

9.  Vitamin D insufficiency in a multiethnic cohort of breast cancer survivors.

Authors:  Marian L Neuhouser; Bess Sorensen; Bruce W Hollis; Anita Ambs; Cornelia M Ulrich; Anne McTiernan; Leslie Bernstein; Sharon Wayne; Frank Gilliland; Kathy Baumgartner; Richard Baumgartner; Rachel Ballard-Barbash
Journal:  Am J Clin Nutr       Date:  2008-07       Impact factor: 7.045

10.  Control of TCF-4 expression by VDR and vitamin D in the mouse mammary gland and colorectal cancer cell lines.

Authors:  Marcy E Beildeck; Md Islam; Salimuddin Shah; Joellen Welsh; Stephen W Byers
Journal:  PLoS One       Date:  2009-11-17       Impact factor: 3.240

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