Literature DB >> 17218020

Simultaneous detection of five different DNA targets by real-time Taqman PCR using the Roche LightCycler480: Application in viral molecular diagnostics.

Richard Molenkamp1, Alwin van der Ham, Janke Schinkel, Marcel Beld.   

Abstract

One of the most interesting aspects of real-time PCR based on the detection of fluorophoric labeled oligonucleotides is the possibility of being able to detect conveniently multiple targets in the same PCR reaction. Recently, Roche Diagnostics launched a real-time PCR platform, the LightCycler480 (LC480), which should be well suited for multiplex real-time PCR analysis. In this paper the performance of the LC480 and accompanying software for the detection of five different targets was analyzed. Target DNAs mixed at equimolar concentrations were detected reproducibly and quantitatively. In addition, mixing different concentrations of the five targets demonstrated that the LC480 is capable of providing quantitative results for a mixture of DNA sequences without losing sensitivity. When applied to the practice of molecular diagnosis of four respiratory viral infections the multiplex assay showed almost complete concordance with corresponding single-target PCRs. The application of multiplex PCR for the detection of multiple pathogens within the same sample will provide a major contribution to the efficiency, logistics and cost-effectiveness of molecular diagnostics.

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Year:  2007        PMID: 17218020     DOI: 10.1016/j.jviromet.2006.12.007

Source DB:  PubMed          Journal:  J Virol Methods        ISSN: 0166-0934            Impact factor:   2.014


  30 in total

1.  Multiplex detection of bacteria in complex clinical and environmental samples using oligonucleotide-coupled fluorescent microspheres.

Authors:  Tim J Dumonceaux; Jennifer R Town; Janet E Hill; Bonnie L Chaban; Sean M Hemmingsen
Journal:  J Vis Exp       Date:  2011-10-23       Impact factor: 1.355

2.  Application of PCR-based methods to assess the infectivity of enteric viruses in environmental samples.

Authors:  Roberto A Rodríguez; Ian L Pepper; Charles P Gerba
Journal:  Appl Environ Microbiol       Date:  2008-11-14       Impact factor: 4.792

3.  Validation of internal controls for extraction and amplification of nucleic acids from enteric viruses in water samples.

Authors:  Akihiko Hata; Hiroyuki Katayama; Masaaki Kitajima; Chettiyappan Visvanathan; Chea Nol; Hiroaki Furumai
Journal:  Appl Environ Microbiol       Date:  2011-05-20       Impact factor: 4.792

4.  Pentaplexed quantitative real-time PCR assay for the simultaneous detection and quantification of botulinum neurotoxin-producing clostridia in food and clinical samples.

Authors:  Sebastian Kirchner; K Melanie Krämer; Martin Schulze; Diana Pauly; Daniela Jacob; Frank Gessler; Andreas Nitsche; Brigitte G Dorner; Martin B Dorner
Journal:  Appl Environ Microbiol       Date:  2010-04-30       Impact factor: 4.792

5.  Microfluidic quantitative PCR for simultaneous quantification of multiple viruses in environmental water samples.

Authors:  Satoshi Ishii; Gaku Kitamura; Takahiro Segawa; Ayano Kobayashi; Takayuki Miura; Daisuke Sano; Satoshi Okabe
Journal:  Appl Environ Microbiol       Date:  2014-09-26       Impact factor: 4.792

6.  Frequent detection of respiratory viruses without symptoms: toward defining clinically relevant cutoff values.

Authors:  Rogier R Jansen; Joanne Wieringa; Sylvie M Koekkoek; Caroline E Visser; Dasja Pajkrt; Richard Molenkamp; Menno D de Jong; Janke Schinkel
Journal:  J Clin Microbiol       Date:  2011-05-04       Impact factor: 5.948

7.  Development and experimental validation of a predictive threshold cycle equation for quantification of virulence and marker genes by high-throughput nanoliter-volume PCR on the OpenArray platform.

Authors:  Robert D Stedtfeld; Samuel W Baushke; Dieter M Tourlousse; Sarah M Miller; Tiffany M Stedtfeld; Erdogan Gulari; James M Tiedje; Syed A Hashsham
Journal:  Appl Environ Microbiol       Date:  2008-04-18       Impact factor: 4.792

8.  Internally controlled triplex quantitative PCR assay for human polyomaviruses JC and BK.

Authors:  Timothy J Dumonceaux; Christine Mesa; Alberto Severini
Journal:  J Clin Microbiol       Date:  2008-07-09       Impact factor: 5.948

9.  Viral multiplex quantitative PCR assays for tracking sources of fecal contamination.

Authors:  Sandro Wolf; Joanne Hewitt; Gail E Greening
Journal:  Appl Environ Microbiol       Date:  2010-01-08       Impact factor: 4.792

10.  Real-time PCR assay for detection of a new simulant for poxvirus biothreat agents.

Authors:  Laurence Garnier; Jean-Christophe Gaudin; Paul Bensadoun; Isabelle Rebillat; Yannick Morel
Journal:  Appl Environ Microbiol       Date:  2009-01-23       Impact factor: 4.792

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