Literature DB >> 17214986

Co-evolution of the archaeal tRNA-dependent amidotransferase GatCAB with tRNA(Asn).

Suk Namgoong1, Kelly Sheppard, R Lynn Sherrer, Dieter Söll.   

Abstract

The important identity elements in tRNA(Gln) and tRNA(Asn) for bacterial GatCAB and in tRNA(Gln) for archaeal GatDE are the D-loop and the first base pair of the acceptor stem. Here we show that Methanothermobacter thermautotrophicus GatCAB, the archaeal enzyme, is different as it discriminates Asp-tRNA(Asp) and Asp-tRNA(Asn) by use of U49, the D-loop and to a lesser extent the variable loop. Since archaea possess the tRNA(Gln)-specific amidotransferase GatDE, the archaeal GatCAB enzyme evolved to recognize different elements in tRNA(Asn) than those recognized by GatDE or by the bacterial GatCAB enzyme in their tRNA substrates.

Entities:  

Mesh：

Substances：

Year:  2007        PMID： 17214986      PMCID： PMC1808439          DOI： 10.1016/j.febslet.2006.12.033

Source DB:  PubMed          Journal:  FEBS Lett        ISSN： 0014-5793            Impact factor:   4.124


  20 in total

Review 1.  Aminoacyl-tRNA synthesis.

Authors:  M Ibba; D Soll
Journal:  Annu Rev Biochem       Date:  2000       Impact factor: 23.643

2.  Domain-specific recruitment of amide amino acids for protein synthesis.

Authors:  D L Tumbula; H D Becker; W Z Chang; D Söll
Journal:  Nature       Date:  2000-09-07       Impact factor: 49.962

3.  Transfer RNA as a cofactor coupling amino acid synthesis with that of protein.

Authors:  M Wilcox; M Nirenberg
Journal:  Proc Natl Acad Sci U S A       Date:  1968-09       Impact factor: 11.205

4.  Mutagenesis and mechanism-based inhibition of Streptococcus pyogenes Glu-tRNAGln amidotransferase implicate a serine-based glutaminase site.

Authors:  Mark R Harpel; Kurumi Y Horiuchi; Ying Luo; Li Shen; Wenjun Jiang; David J Nelson; Kelley C Rogers; Carl P Decicco; Robert A Copeland
Journal:  Biochemistry       Date:  2002-05-21       Impact factor: 3.162

5.  Gamma-glutamyl phosphate attached to glutamine-specific tRNA. A precursor of glutaminyl-tRNA in Bacillus subtilis.

Authors:  M Wilcox
Journal:  Eur J Biochem       Date:  1969-12

6.  Thermus thermophilus contains an eubacterial and an archaebacterial aspartyl-tRNA synthetase.

Authors:  H D Becker; H Roy; L Moulinier; M H Mazauric; G Keith; D Kern
Journal:  Biochemistry       Date:  2000-03-28       Impact factor: 3.162

7.  A single amidotransferase forms asparaginyl-tRNA and glutaminyl-tRNA in Chlamydia trachomatis.

Authors:  G Raczniak; H D Becker; B Min; D Söll
Journal:  J Biol Chem       Date:  2001-10-03       Impact factor: 5.157

8.  Evolutionary divergence of the archaeal aspartyl-tRNA synthetases into discriminating and nondiscriminating forms.

Authors:  Debra Tumbula-Hansen; Liang Feng; Helen Toogood; Karl O Stetter; Dieter Söll
Journal:  J Biol Chem       Date:  2002-07-30       Impact factor: 5.157

9.  Direct glutaminyl-tRNA biosynthesis and indirect asparaginyl-tRNA biosynthesis in Pseudomonas aeruginosa PAO1.

Authors:  Pierre-Marie Akochy; Dominic Bernard; Paul H Roy; Jacques Lapointe
Journal:  J Bacteriol       Date:  2004-02       Impact factor: 3.490

10.  A single tRNA base pair mediates bacterial tRNA-dependent biosynthesis of asparagine.

Authors:  Marc Bailly; Stamatina Giannouli; Mickael Blaise; Constantinos Stathopoulos; Daniel Kern; Hubert Dominique Becker
Journal:  Nucleic Acids Res       Date:  2006-10-29       Impact factor: 16.971
View more
  10 in total

1.  Identifying the ligated amino acid of archaeal tRNAs based on positions outside the anticodon.

Authors:  Tal Galili; Hila Gingold; Shaul Shaul; Yoav Benjamini
Journal:  RNA       Date:  2016-08-11       Impact factor: 4.942

2.  The archaeal transamidosome for RNA-dependent glutamine biosynthesis.

Authors:  Theodoros Rampias; Kelly Sheppard; Dieter Söll
Journal:  Nucleic Acids Res       Date:  2010-05-10       Impact factor: 16.971

3.  Methanothermobacter thermautotrophicus tRNA Gln confines the amidotransferase GatCAB to asparaginyl-tRNA Asn formation.

Authors:  Kelly Sheppard; R Lynn Sherrer; Dieter Söll
Journal:  J Mol Biol       Date:  2008-01-31       Impact factor: 5.469

4.  On the evolution of the tRNA-dependent amidotransferases, GatCAB and GatDE.

Authors:  Kelly Sheppard; Dieter Söll
Journal:  J Mol Biol       Date:  2008-01-16       Impact factor: 5.469

Review 5.  Amino acid modifications on tRNA.

Authors:  Jing Yuan; Kelly Sheppard; Dieter Söll
Journal:  Acta Biochim Biophys Sin (Shanghai)       Date:  2008-07       Impact factor: 3.848

Review 6.  Unconventional genetic code systems in archaea.

Authors:  Kexin Meng; Christina Z Chung; Dieter Söll; Natalie Krahn
Journal:  Front Microbiol       Date:  2022-09-08       Impact factor: 6.064

7.  Recognition of tRNAGln by Helicobacter pylori GluRS2--a tRNAGln-specific glutamyl-tRNA synthetase.

Authors:  Keng-Ming Chang; Tamara L Hendrickson
Journal:  Nucleic Acids Res       Date:  2009-09-15       Impact factor: 16.971

8.  Two distinct regions in Staphylococcus aureus GatCAB guarantee accurate tRNA recognition.

Authors:  Akiyoshi Nakamura; Kelly Sheppard; Junji Yamane; Min Yao; Dieter Söll; Isao Tanaka
Journal:  Nucleic Acids Res       Date:  2009-11-11       Impact factor: 16.971

Review 9.  From one amino acid to another: tRNA-dependent amino acid biosynthesis.

Authors:  Kelly Sheppard; Jing Yuan; Michael J Hohn; Brian Jester; Kevin M Devine; Dieter Söll
Journal:  Nucleic Acids Res       Date:  2008-02-05       Impact factor: 16.971

10.  Divergence of selenocysteine tRNA recognition by archaeal and eukaryotic O-phosphoseryl-tRNASec kinase.

Authors:  R Lynn Sherrer; Joanne M L Ho; Dieter Söll
Journal:  Nucleic Acids Res       Date:  2008-02-11       Impact factor: 16.971
  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.