Literature DB >> 17212519

Improved dissipative particle dynamics simulations of lipid bilayers.

Lianghui Gao1, Julian Shillcock, Reinhard Lipowsky.   

Abstract

The authors introduce a new parameterization for the dissipative particle dynamics simulations of lipid bilayers. In this parameterization, the conservative pairwise forces between beads of the same type in two different hydrophobic chains are chosen to be less repulsive than the water-water interaction, but the intrachain bead interactions are the same as the water-water interaction. For a certain range of parameters, the new bilayer can only be stretched up to 30% before it ruptures. Membrane tension, density profiles, and the in-plane lipid diffusion coefficient of the new bilayer are discussed in detail. They find two kinds of finite size effects that influence the membrane tension: lateral finite size effects, for which larger membranes rupture at a smaller stretch, and transverse finite size effects, for which tensionless bilayers are more compact in larger systems. These finite size effects become rather small when the simulation box is sufficiently large.

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Year:  2007        PMID: 17212519     DOI: 10.1063/1.2424698

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  14 in total

1.  Cluster formation of anchored proteins induced by membrane-mediated interaction.

Authors:  Shuangyang Li; Xianren Zhang; Wenchuan Wang
Journal:  Biophys J       Date:  2010-06-02       Impact factor: 4.033

2.  Mechanical properties of drug loaded diblock copolymer bilayers: A molecular dynamics study.

Authors:  Damián A Grillo; Juan M R Albano; Esteban E Mocskos; Julio C Facelli; Mónica Pickholz; Marta B Ferraro
Journal:  J Chem Phys       Date:  2018-06-07       Impact factor: 3.488

3.  Spatially resolved simulations of membrane reactions and dynamics: multipolar reaction DPD.

Authors:  R M Füchslin; T Maeke; J S McCaskill
Journal:  Eur Phys J E Soft Matter       Date:  2009-08-21       Impact factor: 1.890

4.  Dynamics of multicomponent vesicles in a viscous fluid.

Authors:  Jin Sun Sohn; Yu-Hau Tseng; Shuwang Li; Axel Voigt; John S Lowengrub
Journal:  J Comput Phys       Date:  2010       Impact factor: 3.553

5.  Phase-field modeling of the dynamics of multicomponent vesicles: Spinodal decomposition, coarsening, budding, and fission.

Authors:  John S Lowengrub; Andreas Rätz; Axel Voigt
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2009-03-31

6.  Implicit-solvent dissipative particle dynamics force field based on a four-to-one coarse-grained mapping scheme.

Authors:  Mingwei Wan; Lianghui Gao; Weihai Fang
Journal:  PLoS One       Date:  2018-05-24       Impact factor: 3.240

7.  Backmapping triangulated surfaces to coarse-grained membrane models.

Authors:  Weria Pezeshkian; Melanie König; Tsjerk A Wassenaar; Siewert J Marrink
Journal:  Nat Commun       Date:  2020-05-08       Impact factor: 14.919

8.  Effects of antimicrobial peptide revealed by simulations: translocation, pore formation, membrane corrugation and euler buckling.

Authors:  Licui Chen; Nana Jia; Lianghui Gao; Weihai Fang; Leonardo Golubovic
Journal:  Int J Mol Sci       Date:  2013-04-11       Impact factor: 5.923

9.  Lipid nanotechnology.

Authors:  Samaneh Mashaghi; Tayebeh Jadidi; Gijsje Koenderink; Alireza Mashaghi
Journal:  Int J Mol Sci       Date:  2013-02-21       Impact factor: 5.923

10.  Dissipative Particle Dynamics Simulations for Phospholipid Membranes Based on a Four-To-One Coarse-Grained Mapping Scheme.

Authors:  Xiaoxu Li; Lianghui Gao; Weihai Fang
Journal:  PLoS One       Date:  2016-05-03       Impact factor: 3.240

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