Literature DB >> 17196820

Activation of PKR: an open and shut case?

James L Cole1.   

Abstract

The double-stranded (ds) RNA-activated protein kinase, PKR, has a key role in the innate immunity response to viral infection in higher eukaryotes. PKR contains an N-terminal dsRNA-binding domain and a C-terminal kinase domain. In the prevalent autoinhibition model for PKR activation, dsRNA binding induces a conformational change that leads to the release of the dsRNA-binding domain from the kinase, thus relieving the inhibition of the latent enzyme. Structural and biophysical data now favor a model whereby dsRNA principally functions to induce dimerization of PKR via the kinase domain. This dimerization model has implications for other PKR regulatory mechanisms and represents a new structural paradigm for control of protein kinase activity.

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Year:  2006        PMID: 17196820      PMCID: PMC2703476          DOI: 10.1016/j.tibs.2006.12.003

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  41 in total

1.  Functional characterization of and cooperation between the double-stranded RNA-binding motifs of the protein kinase PKR.

Authors:  B Tian; M B Mathews
Journal:  J Biol Chem       Date:  2000-12-27       Impact factor: 5.157

2.  A dynamically tuned double-stranded RNA binding mechanism for the activation of antiviral kinase PKR.

Authors:  S Nanduri; F Rahman; B R Williams; J Qin
Journal:  EMBO J       Date:  2000-10-16       Impact factor: 11.598

3.  Molecular basis for PKR activation by PACT or dsRNA.

Authors:  Shoudong Li; Gregory A Peters; Keyang Ding; Xiaolun Zhang; Jun Qin; Ganes C Sen
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-19       Impact factor: 11.205

4.  Unactivated PKR exists in an open conformation capable of binding nucleotides.

Authors:  Peter A Lemaire; Ingrid Tessmer; Ranyelle Craig; Dorothy A Erie; James L Cole
Journal:  Biochemistry       Date:  2006-08-01       Impact factor: 3.162

Review 5.  Inhibition of PKR by RNA and DNA viruses.

Authors:  Jeffrey O Langland; Jason M Cameron; Michael C Heck; James K Jancovich; Bertram L Jacobs
Journal:  Virus Res       Date:  2006-05-15       Impact factor: 3.303

6.  Mapping of the auto-inhibitory interactions of protein kinase R by nuclear magnetic resonance.

Authors:  Vladimir Gelev; Huseyin Aktas; Assen Marintchev; Takuhiro Ito; Dominique Frueh; Michael Hemond; David Rovnyak; Mirijam Debus; Sven Hyberts; Anny Usheva; Jose Halperin; Gerhard Wagner
Journal:  J Mol Biol       Date:  2006-09-01       Impact factor: 5.469

7.  Mechanism of activation of the double-stranded-RNA-dependent protein kinase, PKR: role of dimerization and cellular localization in the stimulation of PKR phosphorylation of eukaryotic initiation factor-2 (eIF2).

Authors:  K M Vattem; K A Staschke; R C Wek
Journal:  Eur J Biochem       Date:  2001-07

8.  Inhibitory sequences in the N-terminus of the double-stranded-RNA-dependent protein kinase, PKR, are important for regulating phosphorylation of eukaryotic initiation factor 2alpha (eIF2alpha).

Authors:  K M Vattem; K A Staschke; S Zhu; R C Wek
Journal:  Eur J Biochem       Date:  2001-02

9.  trans-Autophosphorylation by the isolated kinase domain is not sufficient for dimerization or activation of the dsRNA-activated protein kinase PKR.

Authors:  Shiyong Wu; Randal J Kaufman
Journal:  Biochemistry       Date:  2004-08-31       Impact factor: 3.162

10.  Crystal structure of the catalytic domain of the PknB serine/threonine kinase from Mycobacterium tuberculosis.

Authors:  Miguel Ortiz-Lombardía; Frédérique Pompeo; Brigitte Boitel; Pedro M Alzari
Journal:  J Biol Chem       Date:  2003-01-27       Impact factor: 5.157

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  71 in total

1.  Analysis of PKR activation using analytical ultracentrifugation.

Authors:  James L Cole
Journal:  Macromol Biosci       Date:  2010-07-07       Impact factor: 4.979

2.  Dynamic origins of differential RNA binding function in two dsRBDs from the miRNA "microprocessor" complex.

Authors:  Christopher Wostenberg; Kaycee A Quarles; Scott A Showalter
Journal:  Biochemistry       Date:  2010-11-22       Impact factor: 3.162

3.  Regulation of PKR by RNA: formation of active and inactive dimers.

Authors:  Bushra Husain; Stephen Hesler; James L Cole
Journal:  Biochemistry       Date:  2015-10-26       Impact factor: 3.162

4.  The Structure of the Cyprinid herpesvirus 3 ORF112-Zα·Z-DNA Complex Reveals a Mechanism of Nucleic Acids Recognition Conserved with E3L, a Poxvirus Inhibitor of Interferon Response.

Authors:  Krzysztof Kuś; Krzysztof Rakus; Maxime Boutier; Theokliti Tsigkri; Luisa Gabriel; Alain Vanderplasschen; Alekos Athanasiadis
Journal:  J Biol Chem       Date:  2015-11-11       Impact factor: 5.157

5.  PKR regulates B56(alpha)-mediated BCL2 phosphatase activity in acute lymphoblastic leukemia-derived REH cells.

Authors:  Vivian R Ruvolo; Svitlana M Kurinna; Kul B Karanjeet; Todd F Schuster; Alberto M Martelli; James A McCubrey; Peter P Ruvolo
Journal:  J Biol Chem       Date:  2008-10-28       Impact factor: 5.157

6.  Promiscuous 8-alkoxyadenosines in the guide strand of an siRNA: modulation of silencing efficacy and off-pathway protein binding.

Authors:  Uday Ghanty; Erik Fostvedt; Rachel Valenzuela; Peter A Beal; Cynthia J Burrows
Journal:  J Am Chem Soc       Date:  2012-10-11       Impact factor: 15.419

7.  Analysis of PKR structure by small-angle scattering.

Authors:  Jennifer VanOudenhove; Eric Anderson; Susan Krueger; James L Cole
Journal:  J Mol Biol       Date:  2009-02-14       Impact factor: 5.469

8.  Activation of double-stranded RNA-activated protein kinase (PKR) by interferon-stimulated gene 15 (ISG15) modification down-regulates protein translation.

Authors:  Fumihiko Okumura; Akiko J Okumura; Keiji Uematsu; Shigetsugu Hatakeyama; Dong-Er Zhang; Takumi Kamura
Journal:  J Biol Chem       Date:  2012-12-10       Impact factor: 5.157

9.  Analysis of monomeric and dimeric phosphorylated forms of protein kinase R.

Authors:  Eric Anderson; Christine Quartararo; Raymond S Brown; Yu Shi; Xudong Yao; James L Cole
Journal:  Biochemistry       Date:  2010-02-16       Impact factor: 3.162

10.  RNA dimerization promotes PKR dimerization and activation.

Authors:  Laurie A Heinicke; C Jason Wong; Jeffrey Lary; Subba Rao Nallagatla; Amy Diegelman-Parente; Xiaofeng Zheng; James L Cole; Philip C Bevilacqua
Journal:  J Mol Biol       Date:  2009-05-13       Impact factor: 5.469

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