Literature DB >> 17193178

Predicting drug metabolism--an evaluation of the expert system METEOR.

Bernard Testa1, Anne-Loyse Balmat, Anthony Long, Philip Judson.   

Abstract

The paper begins with a discussion of the goals of metabolic predictions in early drug research, and some difficulties toward this objective, mainly the various substrate and product selectivities characteristic of drug metabolism. The major in silico approaches to predict drug metabolism are then classified and summarized. A discrimination is, thus, made between 'local' and 'global' systems. In its second part, an evaluation of METEOR, a rule-based expert system used to predict the metabolism of drugs and other xenobiotics, is reported. The published metabolic data of ten substrates were used in this evaluation, the overall results being discussed in terms of correct vs. disputable (i.e., false-positive and false-negative) predictions. The predictions for four representative substrates are presented in detail (Figs. 1-4), illustrating the interest of such an evaluation in identifying where and how predictive rules can be improved.

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Year:  2005        PMID: 17193178     DOI: 10.1002/cbdv.200590064

Source DB:  PubMed          Journal:  Chem Biodivers        ISSN: 1612-1872            Impact factor:   2.408


  13 in total

Review 1.  Predicting the oxidative metabolism of statins: an application of the MetaSite algorithm.

Authors:  Giulia Caron; Giuseppe Ermondi; Bernard Testa
Journal:  Pharm Res       Date:  2007-03       Impact factor: 4.200

Review 2.  In silico pharmacology for drug discovery: methods for virtual ligand screening and profiling.

Authors:  S Ekins; J Mestres; B Testa
Journal:  Br J Pharmacol       Date:  2007-06-04       Impact factor: 8.739

Review 3.  Modeling kinetics of subcellular disposition of chemicals.

Authors:  Stefan Balaz
Journal:  Chem Rev       Date:  2009-05       Impact factor: 60.622

4.  Prediction of UGT-mediated Metabolism Using the Manually Curated MetaQSAR Database.

Authors:  Angelica Mazzolari; Avid M Afzal; Alessandro Pedretti; Bernard Testa; Giulio Vistoli; Andreas Bender
Journal:  ACS Med Chem Lett       Date:  2019-02-12       Impact factor: 4.345

5.  Understanding the determinants of selectivity in drug metabolism through modeling of dextromethorphan oxidation by cytochrome P450.

Authors:  Julianna Oláh; Adrian J Mulholland; Jeremy N Harvey
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-28       Impact factor: 11.205

6.  Integrated Framework for Identifying Toxic Transformation Products in Complex Environmental Mixtures.

Authors:  Leah Chibwe; Ivan A Titaley; Eunha Hoh; Staci L Massey Simonich
Journal:  Environ Sci Technol Lett       Date:  2017-01-04

7.  A statistical procedure to selectively detect metabolite signals in LC-MS data based on using variable isotope ratios.

Authors:  Lung-Cheng Lin; Hsin-Yi Wu; Vincent Shin-Mu Tseng; Lien-Chin Chen; Yu-Chen Chang; Pao-Chi Liao
Journal:  J Am Soc Mass Spectrom       Date:  2009-10-12       Impact factor: 3.109

Review 8.  Analytical tools and approaches for metabolite identification in early drug discovery.

Authors:  Yuan Chen; Mario Monshouwer; William L Fitch
Journal:  Pharm Res       Date:  2006-10-18       Impact factor: 4.580

Review 9.  Antihypertensive drugs metabolism: an update to pharmacokinetic profiles and computational approaches.

Authors:  Aikaterini Zisaki; Ljubisa Miskovic; Vassily Hatzimanikatis
Journal:  Curr Pharm Des       Date:  2015       Impact factor: 3.116

Review 10.  A review of metabolic and enzymatic engineering strategies for designing and optimizing performance of microbial cell factories.

Authors:  Amanda K Fisher; Benjamin G Freedman; David R Bevan; Ryan S Senger
Journal:  Comput Struct Biotechnol J       Date:  2014-09-03       Impact factor: 7.271

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