Literature DB >> 17191948

Analysis and understanding of high-dimensionality data by means of multivariate data analysis.

Bo Nordén1, Per Broberg, Claes Lindberg, Amelie Plymoth.   

Abstract

Multivariate analysis such as principal-components analysis (PCA) and partial-least-squares-discriminant analysis (PLS-DA) have been applied to peptidomics data from clinical urine samples subjected to LC/MS analysis. We show that it is possible to use these methods to get information from a complex set of clinical data. The aim of the work is to use this information as a first step in the further search for clinical biomarker data. It is possible to identify peptide-biomarker fingerprints related to disease diagnosis and progression. Further, we review clinical proteomics and pharmacogenomics data analyzed with the same multivariate approach.

Mesh:

Year:  2005        PMID: 17191948     DOI: 10.1002/cbdv.200590120

Source DB:  PubMed          Journal:  Chem Biodivers        ISSN: 1612-1872            Impact factor:   2.408


  11 in total

1.  Circadian modulation of the cardiac proteome underpins differential adaptation to morning and evening exercise training: an LC-MS/MS analysis.

Authors:  Dae Yun Seo; Chang Shin Yoon; Louise Anne Dizon; Sung Ryul Lee; Jae Boum Youm; Won Suk Yang; Hyo-Bum Kwak; Tae Hee Ko; Hyoung Kyu Kim; Jin Han; Robin A McGregor
Journal:  Pflugers Arch       Date:  2020-02-06       Impact factor: 3.657

2.  Detection of adulteration of notoginseng root extract with other panax species by quantitative HPLC coupled with PCA.

Authors:  Chong-Zhi Wang; Ming Ni; Shi Sun; Xiao-Li Li; Hui He; Sangeeta R Mehendale; Chun-Su Yuan
Journal:  J Agric Food Chem       Date:  2009-03-25       Impact factor: 5.279

3.  Subgroups based on thermal and pressure pain thresholds in women with chronic whiplash display differences in clinical presentation - an explorative study.

Authors:  Björn Börsbo; Gunilla M Liedberg; Mia Wallin; Björn Gerdle
Journal:  J Pain Res       Date:  2012-11-08       Impact factor: 3.133

4.  Clustering analyses in peptidomics revealed that peptide profiles of infant formulae are descriptive.

Authors:  Tim T Lambers; Jolein Gloerich; Els van Hoffen; Wynand Alkema; Dirk H Hondmann; Eric Af van Tol
Journal:  Food Sci Nutr       Date:  2014-12-30       Impact factor: 2.863

5.  Multivariate proteomic analysis of the cerebrospinal fluid of patients with peripheral neuropathic pain and healthy controls - a hypothesis-generating pilot study.

Authors:  Emmanuel Bäckryd; Bijar Ghafouri; Anders K Carlsson; Patrik Olausson; Björn Gerdle
Journal:  J Pain Res       Date:  2015-07-01       Impact factor: 3.133

6.  Algogenic substances and metabolic status in work-related Trapezius Myalgia: a multivariate explorative study.

Authors:  Björn Gerdle; Jesper Kristiansen; Britt Larsson; Bengt Saltin; Karen Søgaard; Gisela Sjøgaard
Journal:  BMC Musculoskelet Disord       Date:  2014-10-28       Impact factor: 2.362

7.  Pain in the Blood? Envisioning Mechanism-Based Diagnoses and Biomarkers in Clinical Pain Medicine.

Authors:  Emmanuel Bäckryd
Journal:  Diagnostics (Basel)       Date:  2015-03-17

8.  Major bioactive phenolics in Bergenia species from the Indian Himalayan region: Method development, validation and quantitative estimation using UHPLC-QqQLIT-MS/MS.

Authors:  Renu Pandey; Brijesh Kumar; Baleshwar Meena; Mukesh Srivastava; Tripti Mishra; Vandana Tiwari; Mahesh Pal; Narayanan K Nair; Dalip K Upreti; Tikam Singh Rana
Journal:  PLoS One       Date:  2017-07-27       Impact factor: 3.240

9.  Early urinary biomarkers of diabetic nephropathy in type 1 diabetes mellitus show involvement of kallikrein-kinin system.

Authors:  Lenka Vitova; Zdenek Tuma; Jiri Moravec; Milan Kvapil; Martin Matejovic; Jan Mares
Journal:  BMC Nephrol       Date:  2017-03-30       Impact factor: 2.388

10.  A unique four-hub protein cluster associates to glioblastoma progression.

Authors:  Pasquale Simeone; Marco Trerotola; Andrea Urbanella; Rossano Lattanzio; Domenico Ciavardelli; Fabrizio Di Giuseppe; Enrica Eleuterio; Marilisa Sulpizio; Vincenzo Eusebi; Annalisa Pession; Mauro Piantelli; Saverio Alberti
Journal:  PLoS One       Date:  2014-07-22       Impact factor: 3.240

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