Literature DB >> 17189475

Self-assembly of coiled-coil tetramers in the 1.40 A structure of a leucine-zipper mutant.

Yiqun Deng1, Qi Zheng, Jie Liu, Chao-Sheng Cheng, Neville R Kallenbach, Min Lu.   

Abstract

The hydrophobic core of the GCN4 leucine-zipper dimerization domain is formed by a parallel helical association between nonpolar side chains at the a and d positions of the heptad repeat. Here we report a self-assembling coiled-coil array formed by the GCN4-pAe peptide that differs from the wild-type GCN4 leucine zipper by alanine substitutions at three charged e positions. GCN4-pAe is incompletely folded in normal solution conditions yet self-assembles into an antiparallel tetraplex in crystals by formation of unanticipated hydrophobic seams linking the last two heptads of two parallel double-stranded coiled coils. The GCN4-pAe tetramers in the lattice associate laterally through the identical interactions to those in the intramolecular dimer-dimer interface. The van der Waals packing interaction in the solid state controls extended supramolecular assembly of the protein, providing an unusual atomic scale view of a mesostructure.

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Year:  2006        PMID: 17189475      PMCID: PMC2203300          DOI: 10.1110/ps.062590807

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  32 in total

1.  Sticky-end assembly of a designed peptide fiber provides insight into protein fibrillogenesis.

Authors:  M J Pandya; G M Spooner; M Sunde; J R Thorpe; A Rodger; D N Woolfson
Journal:  Biochemistry       Date:  2000-08-01       Impact factor: 3.162

Review 2.  The structure of alpha-helical coiled coils.

Authors:  Andrei N Lupas; Markus Gruber
Journal:  Adv Protein Chem       Date:  2005

3.  A parallel coiled-coil tetramer with offset helices.

Authors:  Jie Liu; Yiqun Deng; Qi Zheng; Chao-Sheng Cheng; Neville R Kallenbach; Min Lu
Journal:  Biochemistry       Date:  2006-11-29       Impact factor: 3.162

4.  Coiled coils at the edge of configurational heterogeneity. Structural analyses of parallel and antiparallel homotetrameric coiled coils reveal configurational sensitivity to a single solvent-exposed amino acid substitution.

Authors:  Maneesh K Yadav; Luke J Leman; Daniel J Price; Charles L Brooks; C David Stout; M Reza Ghadiri
Journal:  Biochemistry       Date:  2006-04-11       Impact factor: 3.162

5.  Tropomyosin coiled-coil interactions: evidence for an unstaggered structure.

Authors:  A D McLachlan; M Stewart
Journal:  J Mol Biol       Date:  1975-10-25       Impact factor: 5.469

6.  X-ray structure of the GCN4 leucine zipper, a two-stranded, parallel coiled coil.

Authors:  E K O'Shea; J D Klemm; P S Kim; T Alber
Journal:  Science       Date:  1991-10-25       Impact factor: 47.728

7.  Spectroscopic determination of tryptophan and tyrosine in proteins.

Authors:  H Edelhoch
Journal:  Biochemistry       Date:  1967-07       Impact factor: 3.162

8.  A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants.

Authors:  P B Harbury; T Zhang; P S Kim; T Alber
Journal:  Science       Date:  1993-11-26       Impact factor: 47.728

Review 9.  Native-like and structurally characterized designed alpha-helical bundles.

Authors:  S F Betz; J W Bryson; W F DeGrado
Journal:  Curr Opin Struct Biol       Date:  1995-08       Impact factor: 6.809

10.  The effects of interhelical electrostatic repulsions between glutamic acid residues in controlling the dimerization and stability of two-stranded alpha-helical coiled-coils.

Authors:  W D Kohn; O D Monera; C M Kay; R S Hodges
Journal:  J Biol Chem       Date:  1995-10-27       Impact factor: 5.157

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  8 in total

1.  The effects of pK(a) tuning on the thermodynamics and kinetics of folding: design of a solvent-shielded carboxylate pair at the a-position of a coiled-coil.

Authors:  Wai Leung Lau; William F Degrado; Heinrich Roder
Journal:  Biophys J       Date:  2010-10-06       Impact factor: 4.033

2.  Essential role of coiled coils for aggregation and activity of Q/N-rich prions and PolyQ proteins.

Authors:  Ferdinando Fiumara; Luana Fioriti; Eric R Kandel; Wayne A Hendrickson
Journal:  Cell       Date:  2010-12-23       Impact factor: 41.582

3.  Probing the interaction between the coiled coil leucine zipper of cGMP-dependent protein kinase Ialpha and the C terminus of the myosin binding subunit of the myosin light chain phosphatase.

Authors:  Alok K Sharma; Guo-Ping Zhou; Joseph Kupferman; Howard K Surks; Eva N Christensen; James J Chou; Michael E Mendelsohn; Alan C Rigby
Journal:  J Biol Chem       Date:  2008-09-09       Impact factor: 5.157

4.  The C-terminal domain of Plasmodium falciparum merozoite surface protein 3 self-assembles into alpha-helical coiled coil tetramer.

Authors:  Claire Gondeau; Giampietro Corradin; Frédéric Heitz; Christian Le Peuch; Andrea Balbo; Peter Schuck; Andrey V Kajava
Journal:  Mol Biochem Parasitol       Date:  2009-02-10       Impact factor: 1.759

5.  A set of computationally designed orthogonal antiparallel homodimers that expands the synthetic coiled-coil toolkit.

Authors:  Christopher Negron; Amy E Keating
Journal:  J Am Chem Soc       Date:  2014-11-13       Impact factor: 15.419

6.  A heterospecific leucine zipper tetramer.

Authors:  Yiqun Deng; Jie Liu; Qi Zheng; Qunnu Li; Neville R Kallenbach; Min Lu
Journal:  Chem Biol       Date:  2008-09-22

7.  Cohesin interaction with centromeric minichromosomes shows a multi-complex rod-shaped structure.

Authors:  Alexandra Surcel; Douglas Koshland; Hong Ma; Robert T Simpson
Journal:  PLoS One       Date:  2008-06-11       Impact factor: 3.240

8.  Two Engineered OBPs with opposite temperature-dependent affinities towards 1-aminoanthracene.

Authors:  Filipa Gonçalves; Tarsila G Castro; Nuno G Azoia; Artur Ribeiro; Carla Silva; Artur Cavaco-Paulo
Journal:  Sci Rep       Date:  2018-10-04       Impact factor: 4.379

  8 in total

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