| Literature DB >> 17183659 |
Ivan Nagaev1, Maria Bokarewa, Andrej Tarkowski, Ulf Smith.
Abstract
The characteristics of human resistin (RETN) are unclear and controversial despite intensive adipose-focused research. Its transcriptional and functional similarity with the murine myeloid-specific and CCAAT/enhancer binding protein epsilon (Cebpe)-dependent gene, resistin-like gamma (Retnlg), is unexplored. We examined the human CEBPE-regulatory pathway by unbiased reference and custom gene expression assays. Real-time RT-PCR analysis demonstrated lack of both the transcriptional factor CEBPE and RETN expression in adipose and muscle cells. In contrast, primary myelocytic samples revealed a concerted CEBPE-RETN transcription that was significantly elevated in inflammatory synoviocytes relative to intact peripheral blood mononuclear cells (PBMC). Mouse Cebpe and Retnlg were predictably expressed in macrophages, whereas Retn was abundant in adipocytes. Quite the opposite, a low and inconsistent RETN transcription was seen in some human white adipose tissue (WAT) biopsies without any relationship to body mass index, insulin sensitivity, or fat depot. However, in these cases, RETN was co-detected with CEBPE and the leukocyte-specific marker, EMR1, indicating the presence of inflammatory cells and their possible resistin-mediated effect on adipocytes. Indeed, addition of human resistin to WAT in culture induced, like in PBMC, the inflammatory cytokines IL6, IL8 and TNF. Importantly, the expression of the adipose-specific markers CEBPA, FABP4 and SLC2A4 was unchanged, while the expected inhibitory effect was seen with TNF. Both cytokines increased the mRNA level of CCL2 and MMP3, which may further promote inflammation in WAT. Thus, the myeloid-restricted nature of CEBPE precludes the expression of RETN in human adipocytes which, however, are targeted by this innate immune-derived proinflammatory cytokine.Entities:
Mesh:
Substances:
Year: 2006 PMID: 17183659 PMCID: PMC1762367 DOI: 10.1371/journal.pone.0000031
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Different Resistin Gene Families in Mus musculus (Mm) and Homo sapiens (Hs)
| Reference → | NCBI | (7, 12) | (1) | (3, 4) |
| (2) | (5, 6) |
| Year → | 2006 | 2000–2004 | 2000 | 2001 | 2000 | 2001 | 2003–2004 |
| Chromosomal Gene Location ↓ | Official Symbol | Other Aliases | Official Name | ||||
|
|
| Xcp4 | Fizz3 |
| A12-alpha | ADSF | |
|
|
| XCP1 | FIZZ3 |
| A12-alpha-like 1 | ADSF | |
|
|
| Xcp2 | Fizz1 | RELMalpha | A12-gamma | ||
|
|
| Xcp3 | Fizz2 | RELMbeta | A12-beta | ||
|
|
| XCP2 | FIZZ1 or 2 | RELMbeta | A12-alpha-like 2 | ||
|
|
| Xcp1 | RELMgamma |
To avoid variant readings of any gene only official symbols and names (in bold) with species-specific spellings as provided by the HUGO Gene Nomenclature Committee and the NCBI are operated in this work together with other aliases when appropriate.
This alias is unpublished discovery of resistin gene family by Rajala MW and Scherer PE with proposal titles as Identification of a novel adipose-specific cysteine-rich secreted protein & Identification of a novel cysteine-rich secreted A12-alpha related protein was supported by five sequences AF290870-74 submitted to the NCBI (28-JUL-2000).
Examination of Gene Expression in Basally Conditioned Tissue and Cell Cultures
| HUMAN GENE → | CEBPE | RETN | EMR1 | ||||
| Adipose/muscle test ↓ | Ct | Ct | Ct | n = | |||
| WAT subcutaneous | 35-UD | 34-UD | 32-UD | 16 | |||
| WAT omental | 33-UD | 34-UD | 31-UD | 9 | |||
| Adipocytes subcutaneous | UD | 39-UD | 36-UD | 14 | |||
| Preadipocytes subcutaneous | UD | UD | UD | 3 | |||
| Muscle | 38-UD | 37-UD | 35-UD | 5 | |||
| Myelocytic sample ↓ | Ct |
| Ct |
| Ct |
| n = |
| PBMC 0 h | 33–35 |
| 28–34 |
| 28–29 |
| 10 |
| PBMC 0.5 h | 33–34 |
| 29–30 |
| na | 3 | |
| PBMC 3 h | 34–34 |
| 30–31 |
| na | 3 | |
| PBMC 24 h | 33–33 |
| 33–35 |
| na | 3 | |
| Synoviocytes | 31–34 |
| 29–34 |
| 28–32 |
| 7 |
| Macrophages | 34–37 |
| 35–38 |
| 33–34 |
| 5–6 |
| THP-1 | 29–32 |
| 37-UD |
| 32–34 |
| 3 |
| MOUSE GENE→ MODEL ↓ | Cebpe | Retn | Retnlg | n = | |||
| WAT subcutaneous | UD | 27–28 | UD | 2 | |||
| 3T3-L1 | UD | 26–27 | UD | 3 | |||
| Macrophages | 29–32 | UD | 32–34 | 3 | |||
The lower the expression, the higher the threshold cycle (Ct) value excluding the invalid detection range from 35 and up to undetermined (UD) Ct if no amplification occurs within 40 cycles. As a result, the expression of tested genes cannot be quantified in human adipose and muscle samples and this part of the data simply shown as indicative Ct intervals obtained in different experiments. Conversely, the operable Ct figures in myeloid/synovial group were evaluated as relative quantities (RQ) with the reference PBMC settings as 1 or 100%.
Common Principle of the Over-Exon-Boundary Location of Probe in Reference Gene Expression Assays (GEA) and Primer(s) in our Custom Tests
| Gene Symbol | GEA Identification Custom RETN Tests | GEA Probe Location | Custom Test Primer 5′-end | Source mRNA Sequence |
| RETN | Hs00220767_m1 | 220 | AF205952 | |
| RETN |
| 127–233 | AF205952 | |
| RETN |
| 129 | AF205952 | |
| RETN |
| 106 | AB111910 | |
| CEBPE | Hs00357657_m1 | 610 | 603 | BC035797 |
| EMR1 | Hs00173562_m1 | 992 | 2404 | X81479 |
| IL6 | Hs00174131_m1 | 390 | 258–401 | M18403 |
| IL8 | Hs00174103_m1 | 169 | 283–398 | Y00787 |
| TNF | Hs00174128_m1 | 366 | 306–380 | M10988 |
| CCL2 | Hs00234140_m1 | 137 | 121 | BC009716 |
| MMP3 | Hs00233962_m1 | 152 | 656 | BC074815 |
| PBEF1 | Hs00237184_m1 | 78/88 | 980/990 | U02020/BC020691 |
| SLC2A4 | Hs00168966_m1 | 180 | 1046–1176 | M20747 |
| CEBPA | Hs00269972_s1 | 2017 | 1457 | U34070 |
| FABP4 | Hs00609791_m1 | 131 | 294–419 | J02874 |
Description of three RETN custom tests: 1) primers in our previous RSTN set (9) overlap two consequent exon-exon junctions, which separately spanned by different probes in 2) RES, a custom construct from another laboratory (15), and in standard RETN GEA from Applied Biosystems; finally, 3) RETN? is our design for the deletion variant of RETN mRNA (45).
5′-end of the probe.
The standard and custom constructs detect both currently known transcript variants of PBEF1.
The assay location is not at exon junction because CEBPA is an intronless gene.
Special Evaluation of Different RETN TaqMan Assays by Absolute (AQ) and Relative (RQ) Quantification Analyses
| Panel A | Ct FAM-RETN | Ct VIC-18S rRNA | Panel B | Ct FAM-RETN | Ct VIC-18S rRNA | AQ Mean-RETN | AQ Mean-18S rRNA | RETN-Normalised AQ | |||||||||||||||||
| Slope: → | −3.57 | −3.92 | −3.55 | −3.6 | −4.18 | −3.44 | AQ StdDev-RETN | AQ StdDev-18S rRNA | RETN-Comparative AQ | RETN-Comparative RQ | |||||||||||||||
| R̂2: → | 0.976 | 0.992 | 0.998 | 0.999 | 0.992 | 0.99 | Sample: ↓ | ||||||||||||||||||
| Assay: → | RSTN | RES | GEA | RSTN | RES | GEA | Assay: → | RSTN | RES | GEA | RSTN | RES | GEA | RSTN | RES | GEA | RSTN | RES | GEA | RSTN | RES | GEA | RSTN | RES | GEA |
| STND-0.1 | 36.77 | 34.74 | 35.09 | 18.03 | 19.39 | 17.33 | Subcutaneous | 38.64 | 36.81 | 36.58 | 15.45 | 15.67 | 14.37 |
|
|
|
|
|
| 0.04155 | 0.03942 | 0.04497 | |||
| 36.82 | 35.5 | 35.08 | 18.25 | 19.54 | 17.25 | WAT | UD | 37.64 | 37.74 | 15.63 | 15.47 | 14.22 | 0.00974 | 0.01399 | 0.04023 | 0.05764 | 0.04356 |
|
|
|
|
|
| ||
| STND-0.5 | 35.13 | 32.04 | 32.54 | 15.61 | 16.1 | 14.53 | Subcutaneous | UD | UD | 38.75 | 16.37 | 16.32 | 14.8 |
|
|
|
| 0.021 | |||||||
| 35.24 | 32.63 | 32.53 | 15.41 | 15.93 | 14.38 | Adipocytes | UD | UD | UD | 16.3 | 16.48 | 14.79 | 0.00955 | 0.0275 | 0.00215 |
|
| ||||||||
| STND-1.0 | 34.25 | 31.08 | 31.8 | 14.45 | 14.72 | 13.18 | Omental | 39.23 | 38.5 | 38.53 | 13.24 | 13.36 | 12.25 |
|
|
|
|
|
| 0.01157 | 0.00435 | 0.00347 | |||
| 34.14 | 30.88 | 31.42 | 14.48 | 14.77 | 13.25 | WAT | 39.25 | 38.93 | 39.65 | 12.94 | 13.06 | 12.42 | 0.00028 | 0.00209 | 0.00388 | 0.33279 | 0.31399 | 0.18924 |
|
|
|
|
|
| |
| STND-5.0 | 31.32 | 28.33 | 28.99 | 12.02 | 12.02 | 11.15 | Muscle | UD | 37.64 | UD | 14.63 | 15.16 | 13.57 |
|
|
|
|
| 0.03044 | 0.00909 | |||||
| 31.11 | 28.24 | 28.86 | 11.87 | 11.88 | 11.03 | UD | 36.9 | 38.67 | 14.9 | 15.16 | 13.37 | 0.00833 | 0.1039 | 0.00293 | 0.10216 |
|
|
|
| ||||||
| STND-10 | 29.9 | 27.33 | 28 | 11.01 | 11.11 | 10.39 | PBMC | 33.94 | 31.5 | 31.95 | 14.1 | 14.36 | 13.62 |
|
|
|
|
|
| 0.70969 | 0.57553 | 0.73665 | |||
| 29.63 | 27.39 | 28.11 | 10.9 | 11.16 | 10.41 | 34.11 | 31.52 | 31.99 | 14.44 | 14.44 | 13.46 | 0.06425 | 0.00541 | 0.01206 | 0.17458 | 0.04557 | 0.07696 |
|
|
|
|
|
| ||
| NTC | UD | UD | UD | 27.37 | 31.51 | 30.86 | Synoviocytes | 33.78 | 31.15 | 31.88 | 15.23 | 15.57 | 14.24 |
|
|
|
|
|
| 1.56603 | 1.35374 | 1.23095 | |||
| UD | UD | UD | 27.87 | 34.45 | 30.58 | 33.97 | 31.35 | 31.88 | 15.46 | 15.77 | 14.2 | 0.07697 | 0.0784 | 0.0003 | 0.06074 | 0.05472 | 0.01143 |
|
|
|
|
|
| ||
Both and are derived from the one-plate-test performed in replicas which shown in distinct from as an interchange of shadow and clear lines. Clarification of acronyms: Ct, cycle of threshold; FAM, reporter dye in RETN detections; VIC, reporter dye in 18S rRNA endogenous control detections; UD, undetermined Ct; Resistin assays RSTN, RES and GEA explained in Table 3.
shows original Ct values in STND, standard nanogram quantity, titrations and consequent standard curve parameters: Slope, cycles/log decade, and R̂2, correlation coefficient. The NTC, no template control, indicates the specificity of detection. The nature of low but persistent signal in 18S rRNA NTC detections is uncertain. Nevertheless, this is definitely not a DNA contamination, because the “pollutant” amplification plots and Ct values along with resulting absolute quantities - all disagree with those in the standard curve assessments. Importantly, this undesirable non-specific signal affects even the nearest STDN-0.1 ng titrations as little as 0.141, 0.013 and 0.009% in corresponding RETN assays.
represents original Ct values and both absolute (AQ) and relative (RQ) quantity evaluations of RETN transcript in six demonstrative samples. In each replica, further derivatives AQ Mean and AQ StdDev, standard deviation, were produced automatically by the program, while RETN-Normalized AQ and RETN-Comparative AQ/RQ manually. The methods execute different equations, but the same normalization by 18S rRNA endogenous control. The final results were evaluated as Comparative AQ = (Normalized AQ Sample)/(Normalized AQ PBMC), where Normalized AQ = (AQ Mean-RETN)/(AQ Mean-18S rRNA); as well as Comparative RQ = 2̂(-ddCt), where ddCt = (dCt Sample)-(dCt PBMC) and dCt = (Ct FAM)-(Ct VIC). All Comparative quantities are proportional to the reference PBMC quantity assigned as 1 or 100%. Notably, they are independent of the quantification method due to both RETN and 18S rRNA slope values in each individual assay are around optimal −3.5 and/or comparable. Finally, for every particular sample, the inter-assay AQ Mean-18S rRNA figures are consistent, that ultimately signifies the equal load and, hence, the true low to absent RETN mRNA content in the adipose/muscle tissues.
Figure 1Resistin Preferentially Induces Inflammatory Markers in Human WAT.
Human WAT explants were incubated with 10 ng/ml TNF, white bars, or 50 ng/ml resistin, grey bars, for 24 hrs and the fold change for several markers assessed by comparison with their level in basal cultures after 24 hrs.
In both gene (left) and protein (right) expressions of proinflammatory cytokines are shown, while represents other inflammation-related effects in WAT.
demonstrates different effects of TNF and resistin on markers of adipocyte differentiation. *, P<0.1; **, P<0.01; ***, P<0.001.