Literature DB >> 1718327

RNA extracted from paraffin-embedded human tissues is amenable to analysis by PCR amplification.

G Stanta1, C Schneider.   

Abstract

Fixed and paraffin-embedded tissues from pathology department archives can be available for RNA expression analysis. In this report, we show that RNA isolated from surgical or autopsy tissues, routinely processed by fixation and paraffin embedding, is not completely degraded. RNA fragments around 100-200 bases in length are still present even in organs late fixed and very rich in RNase, such as the pancreas. Here we describe a general protocol to obtain RNA from single 6-8-microns tissue sections. The RNA extracted can be analyzed for the presence of specific sequences by reverse transcription and amplification with the PCR. We studied the retinoblastoma gene expression in 38 human pancreas specimens from surgical or autopsy origin.

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Year:  1991        PMID: 1718327

Source DB:  PubMed          Journal:  Biotechniques        ISSN: 0736-6205            Impact factor:   1.993


  28 in total

1.  Quantitative mRNA expression analysis from formalin-fixed, paraffin-embedded tissues using 5' nuclease quantitative reverse transcription-polymerase chain reaction.

Authors:  T E Godfrey; S H Kim; M Chavira; D W Ruff; R S Warren; J W Gray; R H Jensen
Journal:  J Mol Diagn       Date:  2000-05       Impact factor: 5.568

2.  Optimizing gene expression analysis in archival brain tissue.

Authors:  Vivianna M D Van Deerlin; Lisa H Gill; Peter T Nelson
Journal:  Neurochem Res       Date:  2002-10       Impact factor: 3.996

3.  Isolating RNA from clinical samples with Catrimox-14 and lithium chloride.

Authors:  D E Macfarlane; C E Dahle
Journal:  J Clin Lab Anal       Date:  1997       Impact factor: 2.352

4.  DNA and RNA obtained from Bouin's fixed tissues.

Authors:  S Bonin; F Petrera; J Rosai; G Stanta
Journal:  J Clin Pathol       Date:  2005-03       Impact factor: 3.411

5.  Multiple gene expression analyses in paraffin-embedded tissues by TaqMan low-density array: Application to hedgehog and Wnt pathway analysis in ovarian endometrioid adenocarcinoma.

Authors:  Adam Steg; Wenquan Wang; Carmelo Blanquicett; Jessica M Grunda; Isam A Eltoum; Kangsheng Wang; Donald J Buchsbaum; Selwyn M Vickers; Suzanne Russo; Robert B Diasio; Andra R Frost; Al F LoBuglio; William E Grizzle; Martin R Johnson
Journal:  J Mol Diagn       Date:  2006-02       Impact factor: 5.568

6.  Mechanisms of laser-induced dissection and transport of histologic specimens.

Authors:  Alfred Vogel; Kathrin Lorenz; Verena Horneffer; Gereon Hüttmann; Dorthe von Smolinski; Andreas Gebert
Journal:  Biophys J       Date:  2007-08-31       Impact factor: 4.033

7.  Endomyocardial fibrosis: pathological and molecular findings of surgically resected ventricular endomyocardium.

Authors:  Silvia D'Andretta Iglezias; Luiz Alberto Benvenuti; Fiorella Calabrese; Vera Maria Cury Salemi; Ana Maria Gonçalves Silva; Elisa Carturan; Sergio Almeida de Oliveira; Gaetano Thiene; Thales De Brito
Journal:  Virchows Arch       Date:  2008-09-02       Impact factor: 4.064

8.  Paraffin embedding contributes to RNA aggregation, reduced RNA yield, and low RNA quality.

Authors:  David L Evers; Junkun He; Yeon Ho Kim; Jeffrey T Mason; Timothy J O'Leary
Journal:  J Mol Diagn       Date:  2011-08-30       Impact factor: 5.568

9.  Efficient DNA extraction for HPV genotyping in formalin-fixed, paraffin-embedded tissues.

Authors:  Martin Steinau; Sonya S Patel; Elizabeth R Unger
Journal:  J Mol Diagn       Date:  2011-05-14       Impact factor: 5.568

10.  Evidence for qualified quantitative mRNA analysis in formalin-fixed and paraffin-embedded colorectal carcinoma cells and tissue.

Authors:  Xiaobo Lu; Tahar van der Straaten; Marco Tiller; Xiaoxia Li
Journal:  J Clin Lab Anal       Date:  2011       Impact factor: 2.352

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