Literature DB >> 17183175

Exploration of triple-helical fragments: crystallization and preliminary X-ray diffraction of d(TGGCCTTAAGG).

Kristof Van Hecke1, Koen Uytterhoeven, Luc Van Meervelt.   

Abstract

The nonamer d(GCGAATTCG) and decamer d(GGCCAATTGG), containing one and two overhanging guanines, respectively, form G x GC triplets in their crystal packing. In order to introduce a third subsequent T x AT triplet, the decamer was further extended by one overhanging thymine residue. Two different crystal morphologies of the sequence d(TGGCCTTAAGG) were obtained by hanging-drop vapour diffusion and diffracted to 2.5 and 2.3 A resolution, respectively. However, both crystals belong to the orthorhombic space group P2(1)2(1)2(1), with similar unit-cell parameters. Therefore, the two data sets could be merged to a resolution of 2.4 A with unit-cell parameters a = 26.97, b = 41.12, c = 52.72 A.

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Year:  2006        PMID: 17183175      PMCID: PMC2330110          DOI: 10.1107/S1744309106054522

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  11 in total

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Authors:  D Vlieghe; J P Turkenburg; L Van Meervelt
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-09

2.  Selective recognition of a C-G base-pair in the parallel DNA triple-helical binding motif.

Authors:  I Prévot-Halter; C J Leumann
Journal:  Bioorg Med Chem Lett       Date:  1999-09-20       Impact factor: 2.823

3.  Crystal structure of d(GGCCAATTGG) complexed with DAPI reveals novel binding mode.

Authors:  D Vlieghe; J Sponer; L Van Meervelt
Journal:  Biochemistry       Date:  1999-12-14       Impact factor: 3.162

4.  2'-O,4'-C-Methylene bridged nucleic acid (2',4'-BNA): synthesis and triplex-forming properties.

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Journal:  Bioorg Med Chem       Date:  2001-04       Impact factor: 3.641

5.  Formation of (C.G)*G triplets in a B-DNA duplex with overhanging bases.

Authors:  D Vlieghe; L Van Meervelt; A Dautant; B Gallois; G Précigoux; O Kennard
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1996-07-01

6.  The CCP4 suite: programs for protein crystallography.

Authors: 
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-09-01

7.  Parallel and antiparallel (G.GC)2 triple helix fragments in a crystal structure.

Authors:  D Vlieghe; L Van Meervelt; A Dautant; B Gallois; G Précigoux; O Kennard
Journal:  Science       Date:  1996-09-20       Impact factor: 47.728

Review 8.  Oligonucleotide N3'-->P5' phosphoramidates as potential therapeutic agents.

Authors:  S M Gryaznov
Journal:  Biochim Biophys Acta       Date:  1999-12-10

9.  Netropsin interactions in the minor groove of d(GGCCAATTGG) studied by a combination of resolution enhancement and ab initio calculations.

Authors:  Kristof Van Hecke; Pham Cam Nam; Minh Tho Nguyen; Luc Van Meervelt
Journal:  FEBS J       Date:  2005-07       Impact factor: 5.542

10.  High-resolution structure of a DNA helix forming (C.G)*G base triplets.

Authors:  L Van Meervelt; D Vlieghe; A Dautant; B Gallois; G Précigoux; O Kennard
Journal:  Nature       Date:  1995-04-20       Impact factor: 49.962

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