Literature DB >> 17183162

Structure of the catalytic domain of the hyperthermophilic chitinase from Pyrococcus furiosus.

Tsutomu Nakamura1, Shouhei Mine, Yoshihisa Hagihara, Kazuhiko Ishikawa, Koichi Uegaki.   

Abstract

The crystal structure of the catalytic domain of a chitinase from the hyperthermophilic archaeon Pyrococcus furiosus (AD2(PF-ChiA)) has been determined at 1.5 A resolution. This is the first structure of the catalytic domain of an archaeal chitinase. The overall structure of AD2(PF-ChiA) is a TIM-barrel fold with a tunnel-like active site that is a common feature of family 18 chitinases. Although the catalytic residues (Asp522, Asp524 and Glu526) are conserved, comparison of the conserved residues and structures with those of other homologous chitinases indicates that the catalytic mechanism of PF-ChiA is different from that of family 18 chitinases.

Entities:  

Mesh:

Substances:

Year:  2006        PMID: 17183162      PMCID: PMC2330115          DOI: 10.1107/S1744309106051773

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  22 in total

1.  The third chitinase gene (chiC) of Serratia marcescens 2170 and the relationship of its product to other bacterial chitinases.

Authors:  K Suzuki; M Taiyoji; N Sugawara; N Nikaidou; B Henrissat; T Watanabe
Journal:  Biochem J       Date:  1999-11-01       Impact factor: 3.857

2.  Structure of a two-domain chitotriosidase from Serratia marcescens at 1.9-A resolution.

Authors:  D M van Aalten; B Synstad; M B Brurberg; E Hough; B W Riise; V G Eijsink; R K Wierenga
Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-23       Impact factor: 11.205

3.  Structural insights into the catalytic mechanism of a family 18 exo-chitinase.

Authors:  D M van Aalten; D Komander; B Synstad; S Gåseidnes; M G Peter; V G Eijsink
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-31       Impact factor: 11.205

4.  UCSF Chimera--a visualization system for exploratory research and analysis.

Authors:  Eric F Pettersen; Thomas D Goddard; Conrad C Huang; Gregory S Couch; Daniel M Greenblatt; Elaine C Meng; Thomas E Ferrin
Journal:  J Comput Chem       Date:  2004-10       Impact factor: 3.376

5.  Crystallization and X-ray diffraction analysis of a catalytic domain of hyperthermophilic chitinase from Pyrococcus furiosus.

Authors:  Shouhei Mine; Tsutomu Nakamura; Kunio Hirata; Kazuhiko Ishikawa; Yoshihisa Hagihara; Koichi Uegaki
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-07-25

6.  Three-dimensional structure of cellobiohydrolase II from Trichoderma reesei.

Authors:  J Rouvinen; T Bergfors; T Teeri; J K Knowles; T A Jones
Journal:  Science       Date:  1990-07-27       Impact factor: 47.728

7.  Crystal structure of a bacterial chitinase at 2.3 A resolution.

Authors:  A Perrakis; I Tews; Z Dauter; A B Oppenheim; I Chet; K S Wilson; C E Vorgias
Journal:  Structure       Date:  1994-12-15       Impact factor: 5.006

8.  Identification of glutamic acid 204 and aspartic acid 200 in chitinase A1 of Bacillus circulans WL-12 as essential residues for chitinase activity.

Authors:  T Watanabe; K Kobori; K Miyashita; T Fujii; H Sakai; M Uchida; H Tanaka
Journal:  J Biol Chem       Date:  1993-09-05       Impact factor: 5.157

9.  Automated MAD and MIR structure solution.

Authors:  T C Terwilliger; J Berendzen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-04

10.  The 1.8 A resolution structure of hevamine, a plant chitinase/lysozyme, and analysis of the conserved sequence and structure motifs of glycosyl hydrolase family 18.

Authors:  A C Terwisscha van Scheltinga; M Hennig; B W Dijkstra
Journal:  J Mol Biol       Date:  1996-09-20       Impact factor: 5.469

View more
  13 in total

1.  An expansion of age constraints for microbial clades that lack a conventional fossil record using phylogenomic dating.

Authors:  Carrine E Blank
Journal:  J Mol Evol       Date:  2011-11-22       Impact factor: 2.395

2.  The Structure of an Archaeal β-Glucosaminidase Provides Insight into Glycoside Hydrolase Evolution.

Authors:  Shouhei Mine; Masahiro Watanabe; Saori Kamachi; Yoshito Abe; Tadashi Ueda
Journal:  J Biol Chem       Date:  2017-01-27       Impact factor: 5.157

3.  N-terminal fusion of a hyperthermophilic chitin-binding domain to xylose isomerase from Thermotoga neapolitana enhances kinetics and thermostability of both free and immobilized enzymes.

Authors:  James M Harris; Kevin L Epting; Robert M Kelly
Journal:  Biotechnol Prog       Date:  2010 Jul-Aug

4.  The importance of chitin in the marine environment.

Authors:  Claudiana P Souza; Bianca C Almeida; Rita R Colwell; Irma N G Rivera
Journal:  Mar Biotechnol (NY)       Date:  2011-05-24       Impact factor: 3.619

5.  Multiple crystal forms of N,N'-diacetylchitobiose deacetylase from Pyrococcus furiosus.

Authors:  Tsutomu Nakamura; Mayumi Niiyama; Wakana Hashimoto; Kurumi Ida; Manabu Abe; Junji Morita; Koichi Uegaki
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-05-20       Impact factor: 1.056

6.  Hallmarks of processivity in glycoside hydrolases from crystallographic and computational studies of the Serratia marcescens chitinases.

Authors:  Christina M Payne; Jamil Baban; Svein J Horn; Paul H Backe; Andrew S Arvai; Bjørn Dalhus; Magnar Bjørås; Vincent G H Eijsink; Morten Sørlie; Gregg T Beckham; Gustav Vaaje-Kolstad
Journal:  J Biol Chem       Date:  2012-09-05       Impact factor: 5.157

7.  Active invasion of bacteria into living fungal cells.

Authors:  Nadine Moebius; Zerrin Üzüm; Jan Dijksterhuis; Gerald Lackner; Christian Hertweck
Journal:  Elife       Date:  2014-09-02       Impact factor: 8.140

8.  Sequence and structural analysis of the chitinase insertion domain reveals two conserved motifs involved in chitin-binding.

Authors:  Hai Li; Lesley H Greene
Journal:  PLoS One       Date:  2010-01-13       Impact factor: 3.240

9.  Genetic engineering of Pyrococcus furiosus to use chitin as a carbon source.

Authors:  Martina Kreuzer; Karolin Schmutzler; Ingrid Waege; Michael Thomm; Winfried Hausner
Journal:  BMC Biotechnol       Date:  2013-02-07       Impact factor: 2.563

10.  Genome Mining of the Genus Streptacidiphilus for Biosynthetic and Biodegradation Potential.

Authors:  Adeel Malik; Yu Ri Kim; Seung Bum Kim
Journal:  Genes (Basel)       Date:  2020-10-03       Impact factor: 4.096

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.