Literature DB >> 17179085

Deterministic and stochastic regimes of asexual evolution on rugged fitness landscapes.

Kavita Jain1, Joachim Krug.   

Abstract

We study the adaptation dynamics of an initially maladapted asexual population with genotypes represented by binary sequences of length L. The population evolves in a maximally rugged fitness landscape with a large number of local optima. We find that whether the evolutionary trajectory is deterministic or stochastic depends on the effective mutational distance d(eff) up to which the population can spread in genotype space. For d(eff) = L, the deterministic quasi-species theory operates while for d(eff) < 1, the evolution is completely stochastic. Between these two limiting cases, the dynamics are described by a local quasi-species theory below a crossover time T(x) while above T(x) the population gets trapped at a local fitness peak and manages to find a better peak via either stochastic tunneling or double mutations. In the stochastic regime d(eff) < 1, we identify two subregimes associated with clonal interference and uphill adaptive walks, respectively. We argue that our findings are relevant to the interpretation of evolution experiments with microbial populations.

Mesh:

Year:  2006        PMID: 17179085      PMCID: PMC1840068          DOI: 10.1534/genetics.106.067165

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  26 in total

Review 1.  Transition between stochastic evolution and deterministic evolution in the presence of selection: general theory and application to virology.

Authors:  I M Rouzine; A Rodrigo; J M Coffin
Journal:  Microbiol Mol Biol Rev       Date:  2001-03       Impact factor: 11.056

2.  Evolution of functionally conserved enhancers can be accelerated in large populations: a population-genetic model.

Authors:  Ashley J R Carter; Günter P Wagner
Journal:  Proc Biol Sci       Date:  2002-05-07       Impact factor: 5.349

Review 3.  Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation.

Authors:  Santiago F Elena; Richard E Lenski
Journal:  Nat Rev Genet       Date:  2003-06       Impact factor: 53.242

4.  Evolution. Climb every mountain?

Authors:  Santiago F Elena; Rafael Sanjuán
Journal:  Science       Date:  2003-12-19       Impact factor: 47.728

5.  Macroevolution simulated with autonomously replicating computer programs.

Authors:  Gabriel Yedid; Graham Bell
Journal:  Nature       Date:  2002 Dec 19-26       Impact factor: 49.962

6.  The speed of adaptation in large asexual populations.

Authors:  Claus O Wilke
Journal:  Genetics       Date:  2004-08       Impact factor: 4.562

7.  Evolution by small steps and rugged landscapes in the RNA virus phi6.

Authors:  C L Burch; L Chao
Journal:  Genetics       Date:  1999-03       Impact factor: 4.562

8.  Evidence for multiple adaptive peaks from populations of bacteria evolving in a structured habitat.

Authors:  R Korona; C H Nakatsu; L J Forney; R E Lenski
Journal:  Proc Natl Acad Sci U S A       Date:  1994-09-13       Impact factor: 11.205

9.  Evolvability of an RNA virus is determined by its mutational neighbourhood.

Authors:  C L Burch; L Chao
Journal:  Nature       Date:  2000-08-10       Impact factor: 49.962

10.  Quasispecies theory in the context of population genetics.

Authors:  Claus O Wilke
Journal:  BMC Evol Biol       Date:  2005-08-17       Impact factor: 3.260

View more
  27 in total

1.  Fast stochastic algorithm for simulating evolutionary population dynamics.

Authors:  William H Mather; Jeff Hasty; Lev S Tsimring
Journal:  Bioinformatics       Date:  2012-03-21       Impact factor: 6.937

2.  Mutational effects and population dynamics during viral adaptation challenge current models.

Authors:  Craig R Miller; Paul Joyce; Holly A Wichman
Journal:  Genetics       Date:  2010-11-01       Impact factor: 4.562

3.  Inference for one-step beneficial mutations using next generation sequencing.

Authors:  Andrzej J Wojtowicz; Craig R Miller; Paul Joyce
Journal:  Stat Appl Genet Mol Biol       Date:  2015-02

4.  Clonal interference in large populations.

Authors:  Su-Chan Park; Joachim Krug
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-05       Impact factor: 11.205

5.  The fastest evolutionary trajectory.

Authors:  Arne Traulsen; Yoh Iwasa; Martin A Nowak
Journal:  J Theor Biol       Date:  2007-08-28       Impact factor: 2.691

Review 6.  The fixation probability of beneficial mutations.

Authors:  Z Patwa; L M Wahl
Journal:  J R Soc Interface       Date:  2008-11-06       Impact factor: 4.118

7.  The frequency of fitness peak shifts is increased at expanding range margins due to mutation surfing.

Authors:  Olivia J Burton; Justin M J Travis
Journal:  Genetics       Date:  2008-05-27       Impact factor: 4.562

8.  Impact of epistasis and pleiotropy on evolutionary adaptation.

Authors:  Bjørn Ostman; Arend Hintze; Christoph Adami
Journal:  Proc Biol Sci       Date:  2011-06-22       Impact factor: 5.349

9.  Coevolving parasites enhance the diversity-decreasing effect of dispersal.

Authors:  Tom Vogwill; Andy Fenton; Michael A Brockhurst
Journal:  Biol Lett       Date:  2011-02-16       Impact factor: 3.703

10.  The impact of population size on the evolution of asexual microbes on smooth versus rugged fitness landscapes.

Authors:  Andreas Handel; Daniel E Rozen
Journal:  BMC Evol Biol       Date:  2009-09-18       Impact factor: 3.260

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.