Literature DB >> 17179075

Estimation of population heterozygosity and library construction-induced mutation rate from expressed sequence tag collections.

A D Long1, P Beldade, S J Macdonald.   

Abstract

Unigene alignments obtained from cDNA libraries made using multiple individuals are not currently used to estimate population heterozygosity, as they are known to harbor mutations created during library construction. We describe an estimator of population heterozygosity that utilizes only SNPs unlikely to be library construction artifacts.

Mesh：

Year:  2006        PMID： 17179075      PMCID： PMC1893025          DOI： 10.1534/genetics.106.063610

Source DB:  PubMed          Journal:  Genetics        ISSN： 0016-6731            Impact factor:   4.562


  6 in total

1.  Mining SNPs from EST databases.

Authors:  L Picoult-Newberg; T E Ideker; M G Pohl; S L Taylor; M A Donaldson; D A Nickerson; M Boyce-Jacino
Journal:  Genome Res       Date:  1999-02       Impact factor: 9.043

2.  Expressed sequence tags: alternative or complement to whole genome sequences?

Authors:  Stephen Rudd
Journal:  Trends Plant Sci       Date:  2003-07       Impact factor: 18.313

3.  Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations.

Authors:  M Slatkin; R R Hudson
Journal:  Genetics       Date:  1991-10       Impact factor: 4.562

4.  Statistical properties of segregating sites.

Authors:  Y X Fu
Journal:  Theor Popul Biol       Date:  1995-10       Impact factor: 1.570

5.  Contribution of Distal-less to quantitative variation in butterfly eyespots.

Authors:  Patrícia Beldade; Paul M Brakefield; Anthony D Long
Journal:  Nature       Date:  2002-01-17       Impact factor: 49.962

6.  A wing expressed sequence tag resource for Bicyclus anynana butterflies, an evo-devo model.

Authors:  Patrícia Beldade; Stephen Rudd; Jonathan D Gruber; Anthony D Long
Journal:  BMC Genomics       Date:  2006-05-31       Impact factor: 3.969
  6 in total
  8 in total

1.  Rapidly developing functional genomics in ecological model systems via 454 transcriptome sequencing.

Authors:  Christopher W Wheat
Journal:  Genetica       Date:  2008-10-18       Impact factor: 1.082

2.  Population-level transcriptome sequencing of nonmodel organisms Erynnis propertius and Papilio zelicaon.

Authors:  Shawn T O'Neil; Jason D K Dzurisin; Rory D Carmichael; Neil F Lobo; Scott J Emrich; Jessica J Hellmann
Journal:  BMC Genomics       Date:  2010-05-17       Impact factor: 3.969

3.  Analysis of a normalised expressed sequence tag (EST) library from a key pollinator, the bumblebee Bombus terrestris.

Authors:  Ben M Sadd; Michael Kube; Sven Klages; Richard Reinhardt; Paul Schmid-Hempel
Journal:  BMC Genomics       Date:  2010-02-15       Impact factor: 3.969

4.  Genomic sequence around butterfly wing development genes: annotation and comparative analysis.

Authors:  Inês C Conceição; Anthony D Long; Jonathan D Gruber; Patrícia Beldade
Journal:  PLoS One       Date:  2011-08-31       Impact factor: 3.240

5.  Accurate and fast methods to estimate the population mutation rate from error prone sequences.

Authors:  Bjarne Knudsen; Michael M Miyamoto
Journal:  BMC Bioinformatics       Date:  2009-08-11       Impact factor: 3.169

6.  A gene-based linkage map for Bicyclus anynana butterflies allows for a comprehensive analysis of synteny with the lepidopteran reference genome.

Authors:  Patrícia Beldade; Suzanne V Saenko; Nicolien Pul; Anthony D Long
Journal:  PLoS Genet       Date:  2009-02-06       Impact factor: 5.917

7.  An expressed sequence tag (EST) library for Drosophila serrata, a model system for sexual selection and climatic adaptation studies.

Authors:  Francesca D Frentiu; Marcin Adamski; Elizabeth A McGraw; Mark W Blows; Stephen F Chenoweth
Journal:  BMC Genomics       Date:  2009-01-21       Impact factor: 3.969

8.  Genomic Signatures of Local Adaptation in Clam Shrimp (Eulimnadia texana) from Natural Vernal Pools.

Authors:  James G Baldwin-Brown; Anthony D Long
Journal:  Genome Biol Evol       Date:  2020-07-01       Impact factor: 3.416
  8 in total

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