Literature DB >> 17176052

Mutagenesis and modeling of the peroxiredoxin (Prx) complex with the NMR structure of ATP-bound human sulfiredoxin implicate aspartate 187 of Prx I as the catalytic residue in ATP hydrolysis.

Duck-Yeon Lee1, Sung Jun Park, Woojin Jeong, Ho Jin Sung, Taena Oho, Xiongwu Wu, Sue Goo Rhee, James M Gruschus.   

Abstract

The catalytic cysteine of certain members of the peroxiredoxin (Prx) family can be hyperoxidized to cysteinesulfinic acid during reduction of peroxides. Sulfiredoxin is responsible for the ATP-dependent reduction of cysteinesulfinic acid (SO2H) of hyperoxidized Prx. Here we report the NMR solution structure of human sulfiredoxin (hSrx), both with and without bound ATP, and we model the complex of ATP-bound hSrx with Prx. Binding ATP causes only small changes in the NMR structure of hSrx, and the bound ATP conformation is quite similar to that seen for the previously reported X-ray structure of the ADP-hSrx complex. Although hSrx binds ATP, it does not catalyze hydrolysis by itself and has no catalytic acid residue typical of most ATPase and kinase family proteins. For modeling the complex, the ATP-bound hSrx was docked to hyperoxidized Prx II using EMAP of CHARMM. In the model complex, Asn186 of Prx II (Asp187 of Prx I) is in contact with the hSrx-bound ATP beta- and gamma-phosphate groups. Asp187 of Prx I was mutated to alanine and asparagine, and binding and activity of the mutants with hSrx were compared to those of the wild type. For the D187N mutant, both binding and hydrolysis and reduction activities were comparable to those of the wild type, whereas for D187A, binding was unimpaired but ATP hydrolysis and reduction did not occur. The modeling and mutagenesis analyses strongly implicate Asp187 of Prx I as the catalytic residue responsible for ATP hydrolysis in the cysteinesulfinic acid reduction of Prx by hSrx.

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Year:  2006        PMID: 17176052     DOI: 10.1021/bi061824h

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  12 in total

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Authors:  B R Brooks; C L Brooks; A D Mackerell; L Nilsson; R J Petrella; B Roux; Y Won; G Archontis; C Bartels; S Boresch; A Caflisch; L Caves; Q Cui; A R Dinner; M Feig; S Fischer; J Gao; M Hodoscek; W Im; K Kuczera; T Lazaridis; J Ma; V Ovchinnikov; E Paci; R W Pastor; C B Post; J Z Pu; M Schaefer; B Tidor; R M Venable; H L Woodcock; X Wu; W Yang; D M York; M Karplus
Journal:  J Comput Chem       Date:  2009-07-30       Impact factor: 3.376

2.  The pleckstrin homology (PH) domain of the Arf exchange factor Brag2 is an allosteric binding site.

Authors:  Xiaoying Jian; James M Gruschus; Elizabeth Sztul; Paul A Randazzo
Journal:  J Biol Chem       Date:  2012-05-21       Impact factor: 5.157

3.  Deglutathionylation of 2-Cys peroxiredoxin is specifically catalyzed by sulfiredoxin.

Authors:  Ji Won Park; John J Mieyal; Sue Goo Rhee; P Boon Chock
Journal:  J Biol Chem       Date:  2009-06-27       Impact factor: 5.157

4.  The ClusPro web server for protein-protein docking.

Authors:  Dima Kozakov; David R Hall; Bing Xia; Kathryn A Porter; Dzmitry Padhorny; Christine Yueh; Dmitri Beglov; Sandor Vajda
Journal:  Nat Protoc       Date:  2017-01-12       Impact factor: 13.491

5.  The dual-targeted plant sulfiredoxin retroreduces the sulfinic form of atypical mitochondrial peroxiredoxin.

Authors:  Iván Iglesias-Baena; Sergio Barranco-Medina; Francisca Sevilla; Juan-José Lázaro
Journal:  Plant Physiol       Date:  2010-12-07       Impact factor: 8.340

6.  Protein cysteine sulfinic acid reductase (sulfiredoxin) as a regulator of cell proliferation and drug response.

Authors:  K Lei; D M Townsend; K D Tew
Journal:  Oncogene       Date:  2008-05-05       Impact factor: 9.867

7.  Interactions of the acidic domain and SRF interacting motifs with the NKX3.1 homeodomain.

Authors:  Jeong Ho Ju; Jin-Soo Maeng; Duck-Yeon Lee; Grzegorz Piszczek; Edward P Gelmann; James M Gruschus
Journal:  Biochemistry       Date:  2009-11-10       Impact factor: 3.162

8.  Dynamic interaction between Arf GAP and PH domains of ASAP1 in the regulation of GAP activity.

Authors:  Ruibai Luo; Lisa M Miller Jenkins; Paul A Randazzo; James Gruschus
Journal:  Cell Signal       Date:  2008-07-11       Impact factor: 4.315

9.  Mitochondrial peroxiredoxin 3 is more resilient to hyperoxidation than cytoplasmic peroxiredoxins.

Authors:  Andrew G Cox; Andree G Pearson; Juliet M Pullar; Thomas J Jönsson; W Todd Lowther; Christine C Winterbourn; Mark B Hampton
Journal:  Biochem J       Date:  2009-06-12       Impact factor: 3.857

10.  Structure of the sulphiredoxin-peroxiredoxin complex reveals an essential repair embrace.

Authors:  Thomas J Jönsson; Lynnette C Johnson; W Todd Lowther
Journal:  Nature       Date:  2008-01-03       Impact factor: 49.962

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