Literature DB >> 17176050

Direct sugar binding to LacY measured by resonance energy transfer.

Irina N Smirnova1, Vladimir N Kasho, H Ronald Kaback.   

Abstract

Trp151 in the lactose permease of Escherichia coli (LacY) is an important component of the sugar-binding site and the only Trp residue out of six that is in close proximity to the galactopyranoside in the structure (1PV7). The short distance between Trp151 and the sugar is favorable for Förster resonance energy transfer (FRET) to nitrophenyl or dansyl derivatives with the fluorophore at the anomeric position of galactose. Modeling of 4-nitrophenyl-alpha-d-galactopyranoside (alpha-NPG) in the binding-site of LacY places the nitrophenyl moiety about 12 A away from Trp151, a distance commensurate with the Förster distance for a Trp-nitrobenzoyl pair. We demonstrate here that alpha-NPG binding to LacY containing all six native Trp residues causes galactopyranoside-specific FRET from Trp151. Moreover, binding of alpha-NPG is sufficiently slow to resolve time-dependent fluorescence changes by stopped-flow. The rate of change in Trp --> alpha-NPG FRET is linearly dependent upon sugar concentration, which allows estimation of kinetic parameters for binding. Furthermore, 2-(4'-maleimidylanilino)naphthalene-6-sulfonic acid (MIANS) covalently attached to the cytoplasmic end of helix X is sensitive to sugar binding, reflecting a ligand-induced conformational change. Stopped-flow kinetics of Trp --> alpha-NPG FRET and sugar-induced changes in MIANS fluorescence in the same protein reveal a two-step process: a relatively rapid binding step detected by Trp151 --> alpha-NPG FRET followed by a slower conformational change detected by a change in MIANS fluorescence.

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Year:  2006        PMID: 17176050      PMCID: PMC2566955          DOI: 10.1021/bi061632m

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  27 in total

1.  Measurement of the dead time of a fluorescence stopped-flow instrument.

Authors:  B F Peterman
Journal:  Anal Biochem       Date:  1979-03       Impact factor: 3.365

Review 2.  Resonance energy transfer: methods and applications.

Authors:  P Wu; L Brand
Journal:  Anal Biochem       Date:  1994-04       Impact factor: 3.365

3.  Interhelical packing modulates conformational flexibility in the lactose permease of Escherichia coli.

Authors:  Natalia V Ermolova; Irina N Smirnova; Vladimir N Kasho; H Ronald Kaback
Journal:  Biochemistry       Date:  2005-05-31       Impact factor: 3.162

4.  Probing the conformation of the lactose permease of Escherichia coli by in situ site-directed sulfhydryl modification.

Authors:  S Frillingos; H R Kaback
Journal:  Biochemistry       Date:  1996-04-02       Impact factor: 3.162

5.  Exchange, efflux, and substrate binding by cysteine mutants of the lactose permease of Escherichia coli.

Authors:  P R van Iwaarden; A J Driessen; J S Lolkema; H R Kaback; W N Konings
Journal:  Biochemistry       Date:  1993-05-25       Impact factor: 3.162

6.  Ligand-induced conformational changes in the lactose permease of Escherichia coli: evidence for two binding sites.

Authors:  J Wu; S Frillingos; J Voss; H R Kaback
Journal:  Protein Sci       Date:  1994-12       Impact factor: 6.725

7.  The substrate-binding site in the lactose permease of Escherichia coli.

Authors:  P Venkatesan; H R Kaback
Journal:  Proc Natl Acad Sci U S A       Date:  1998-08-18       Impact factor: 11.205

8.  Equilibrium between two forms of the lac carrier protein in energized and nonenergized membrane vesicles from Escherichia coli.

Authors:  G Rudnick; S Schildiner; H R Kaback
Journal:  Biochemistry       Date:  1976-11-16       Impact factor: 3.162

9.  Sugar recognition by the lactose permease of Escherichia coli.

Authors:  José Luis Vázquez-Ibar; Lan Guan; Adam B Weinglass; Gill Verner; Ruth Gordillo; H Ronald Kaback
Journal:  J Biol Chem       Date:  2004-09-13       Impact factor: 5.157

10.  cys154 Is important for lac permease activity in Escherichia coli.

Authors:  D R Menick; H K Sarkar; M S Poonian; H R Kaback
Journal:  Biochem Biophys Res Commun       Date:  1985-10-15       Impact factor: 3.575

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  33 in total

1.  Role of Conserved Gly-Gly Pairs on the Periplasmic Side of LacY.

Authors:  Xiaoxu Jiang; Magnus Andersson; Bryan T Chau; Larissa Y Wong; Maria Katerina R Villafuerte; H Ronald Kaback
Journal:  Biochemistry       Date:  2016-08-01       Impact factor: 3.162

2.  Single-molecule FRET reveals sugar-induced conformational dynamics in LacY.

Authors:  Devdoot S Majumdar; Irina Smirnova; Vladimir Kasho; Eyal Nir; Xiangxu Kong; Shimon Weiss; H Ronald Kaback
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-14       Impact factor: 11.205

3.  Electrophysiological characterization of LacY.

Authors:  Juan J Garcia-Celma; Irina N Smirnova; H Ronald Kaback; Klaus Fendler
Journal:  Proc Natl Acad Sci U S A       Date:  2009-04-21       Impact factor: 11.205

4.  Structure of LacY with an α-substituted galactoside: Connecting the binding site to the protonation site.

Authors:  Hemant Kumar; Janet S Finer-Moore; H Ronald Kaback; Robert M Stroud
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-08       Impact factor: 11.205

5.  A chemiosmotic mechanism of symport.

Authors:  H Ronald Kaback
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-07       Impact factor: 11.205

6.  pKa of Glu325 in LacY.

Authors:  Natalia Grytsyk; Junichi Sugihara; H Ronald Kaback; Petra Hellwig
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-01       Impact factor: 11.205

7.  Engineered occluded apo-intermediate of LacY.

Authors:  Irina Smirnova; Vladimir Kasho; H Ronald Kaback
Journal:  Proc Natl Acad Sci U S A       Date:  2018-11-26       Impact factor: 11.205

8.  The fast release of sticky protons: kinetics of substrate binding and proton release in a multidrug transporter.

Authors:  Yoav Adam; Naama Tayer; Dvir Rotem; Gideon Schreiber; Shimon Schuldiner
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-02       Impact factor: 11.205

9.  Protonation and sugar binding to LacY.

Authors:  Irina N Smirnova; Vladimir Kasho; H Ronald Kaback
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-20       Impact factor: 11.205

10.  Probing of the rates of alternating access in LacY with Trp fluorescence.

Authors:  Irina Smirnova; Vladimir Kasho; Junichi Sugihara; H Ronald Kaback
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-03       Impact factor: 11.205

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