Literature DB >> 17172770

Quality control and validation.

Gerard J Kleywegt1.   

Abstract

This chapter discusses two important aspects of the structure determination process that are related to the accuracy and reliability of the crystallographic model under investigation. Quality control is defined as the analysis of an intermediate model to identify aspects of it that are unusual in some sense and that could, therefore, be a result of errors in the model building or refinement process. Any such errors need to be fixed, if at all possible, prior to analysis and publication of the model. Validation is the process of assessing the reliability of the final model (or certain aspects of it, e.g., the active site residues) that is about to be analyzed, published, deposited, and possibly used in follow-up studies.

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Year:  2007        PMID: 17172770     DOI: 10.1385/1-59745-266-1:255

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  7 in total

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2.  Mechanisms of opening and closing of the bacterial replicative helicase.

Authors:  Jillian Chase; Andrew Catalano; Alex J Noble; Edward T Eng; Paul Db Olinares; Kelly Molloy; Danaya Pakotiprapha; Martin Samuels; Brian Chait; Amedee des Georges; David Jeruzalmi
Journal:  Elife       Date:  2018-12-24       Impact factor: 8.140

3.  Structure of cytochrome P450 2B4 with an acetate ligand and an active site hydrogen bond network similar to oxyferrous P450cam.

Authors:  Yuting Yang; Weishu Bu; Sangchoul Im; Jennifer Meagher; Jeanne Stuckey; Lucy Waskell
Journal:  J Inorg Biochem       Date:  2018-04-30       Impact factor: 4.155

4.  Structural and functional characterization of a cytochrome P450 2B4 F429H mutant with an axial thiolate-histidine hydrogen bond.

Authors:  Yuting Yang; Haoming Zhang; Dandamudi Usharani; Weishu Bu; Sangchoul Im; Michael Tarasev; Freeborn Rwere; Naw May Pearl; Jennifer Meagher; Cuthbert Sun; Jeanne Stuckey; Sason Shaik; Lucy Waskell
Journal:  Biochemistry       Date:  2014-07-31       Impact factor: 3.162

5.  The ABC-F protein EttA gates ribosome entry into the translation elongation cycle.

Authors:  Grégory Boël; Paul C Smith; Wei Ning; Michael T Englander; Bo Chen; Yaser Hashem; Anthony J Testa; Jeffrey J Fischer; Hans-Joachim Wieden; Joachim Frank; Ruben L Gonzalez; John F Hunt
Journal:  Nat Struct Mol Biol       Date:  2014-01-05       Impact factor: 15.369

Review 6.  Molecular replacement then and now.

Authors:  Giovanna Scapin
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-10-18

7.  Structural analysis and mutant growth properties reveal distinctive enzymatic and cellular roles for the three major L-alanine transaminases of Escherichia coli.

Authors:  Esther Peña-Soler; Francisco J Fernandez; Miguel López-Estepa; Fernando Garces; Andrew J Richardson; Juan F Quintana; Kenneth E Rudd; Miquel Coll; M Cristina Vega
Journal:  PLoS One       Date:  2014-07-11       Impact factor: 3.240

  7 in total

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