Literature DB >> 17165744

Chemical rescue of alpha3-galactosyltransferase. Implications in the mechanism of retaining glycosyltransferases.

Ana Monegal1, Antoni Planas.   

Abstract

The mechanism of retaining glycosyltransferases is still poorly understood and the subject of current debate. Both double displacement and front side single displacement (SNi) mechanisms have been proposed. A "chemical rescue methodology" is here applied to a retaining alpha3-galactosyltransferase. Azide as exogenous nucleophile rescues the activity of the inactive E317A mutant to give beta-d-galactosylazide. This result fits best with a double displacement mechanism in which Glu317 is the enzyme nucleophile involved in the formation of a glycosyl-enzyme intermediate.

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Year:  2006        PMID: 17165744     DOI: 10.1021/ja0659931

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  11 in total

1.  Conformational plasticity of the essential membrane-associated mannosyltransferase PimA from mycobacteria.

Authors:  David Giganti; Jorge Alegre-Cebollada; Saioa Urresti; David Albesa-Jové; Ane Rodrigo-Unzueta; Natalia Comino; Michael Kachala; Sonia López-Fernández; Dmitri I Svergun; Julio M Fernández; Marcelo E Guerin
Journal:  J Biol Chem       Date:  2013-08-20       Impact factor: 5.157

Review 2.  Structure-function relationships of membrane-associated GT-B glycosyltransferases.

Authors:  David Albesa-Jové; David Giganti; Mary Jackson; Pedro M Alzari; Marcelo E Guerin
Journal:  Glycobiology       Date:  2013-11-18       Impact factor: 4.313

3.  Mechanistic evidence for a front-side, SNi-type reaction in a retaining glycosyltransferase.

Authors:  Seung Seo Lee; Sung You Hong; James C Errey; Atsushi Izumi; Gideon J Davies; Benjamin G Davis
Journal:  Nat Chem Biol       Date:  2011-08-07       Impact factor: 15.040

4.  Conserved residues Arg188 and Asp302 are critical for active site organization and catalysis in human ABO(H) blood group A and B glycosyltransferases.

Authors:  Susannah M L Gagnon; Max S G Legg; Robert Polakowski; James A Letts; Mattias Persson; Shuangjun Lin; Ruixiang Blake Zheng; Brian Rempel; Brock Schuman; Omid Haji-Ghassemi; Svetlana N Borisova; Monica M Palcic; Stephen V Evans
Journal:  Glycobiology       Date:  2018-08-01       Impact factor: 4.313

5.  Novel dextranase catalyzing cycloisomaltooligosaccharide formation and identification of catalytic amino acids and their functions using chemical rescue approach.

Authors:  Young-Min Kim; Yoshiaki Kiso; Tomoe Muraki; Min-Sun Kang; Hiroyuki Nakai; Wataru Saburi; Weeranuch Lang; Hee-Kwon Kang; Masayuki Okuyama; Haruhide Mori; Ryuichiro Suzuki; Kazumi Funane; Nobuhiro Suzuki; Mitsuru Momma; Zui Fujimoto; Tetsuya Oguma; Mikihiko Kobayashi; Doman Kim; Atsuo Kimura
Journal:  J Biol Chem       Date:  2012-03-29       Impact factor: 5.157

6.  Bacterial β-Kdo glycosyltransferases represent a new glycosyltransferase family (GT99).

Authors:  Olga G Ovchinnikova; Evan Mallette; Akihiko Koizumi; Todd L Lowary; Matthew S Kimber; Chris Whitfield
Journal:  Proc Natl Acad Sci U S A       Date:  2016-05-19       Impact factor: 11.205

7.  Structures of a human blood group glycosyltransferase in complex with a photo-activatable UDP-Gal derivative reveal two different binding conformations.

Authors:  René Jørgensen; Gaëlle Batot; Karin Mannerstedt; Anne Imberty; Christelle Breton; Ole Hindsgaul; Antoine Royant; Monica M Palcic
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-07-23       Impact factor: 1.056

8.  Substrate-induced conformational changes and dynamics of UDP-N-acetylgalactosamine:polypeptide N-acetylgalactosaminyltransferase-2.

Authors:  A L Milac; N V Buchete; T A Fritz; G Hummer; L A Tabak
Journal:  J Mol Biol       Date:  2007-08-21       Impact factor: 5.469

9.  Structural and enzymatic analysis of MshA from Corynebacterium glutamicum: substrate-assisted catalysis.

Authors:  Matthew W Vetting; Patrick A Frantom; John S Blanchard
Journal:  J Biol Chem       Date:  2008-04-04       Impact factor: 5.157

10.  Stepwise catalytic mechanism via short-lived intermediate inferred from combined QM/MM MERP and PES calculations on retaining glycosyltransferase ppGalNAcT2.

Authors:  Tomáš Trnka; Stanislav Kozmon; Igor Tvaroška; Jaroslav Koča
Journal:  PLoS Comput Biol       Date:  2015-04-07       Impact factor: 4.475

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