Literature DB >> 17160034

NCBI GEO standards and services for microarray data.

Ron Edgar, Tanya Barrett.   

Abstract

Mesh：

Year:  2006        PMID： 17160034      PMCID： PMC2270403          DOI： 10.1038/nbt1206-1471

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


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  5 in total

1.  Minimum information about a microarray experiment (MIAME)-toward standards for microarray data.

Authors:  A Brazma; P Hingamp; J Quackenbush; G Sherlock; P Spellman; C Stoeckert; J Aach; W Ansorge; C A Ball; H C Causton; T Gaasterland; P Glenisson; F C Holstege; I F Kim; V Markowitz; J C Matese; H Parkinson; A Robinson; U Sarkans; S Schulze-Kremer; J Stewart; R Taylor; J Vilo; M Vingron
Journal:  Nat Genet       Date:  2001-12       Impact factor: 38.330

2.  MIAME, we have a problem.

Authors:  Robert Shields
Journal:  Trends Genet       Date:  2005-12-27       Impact factor: 11.639

3.  Challenge of choosing right level of microarray detail.

Authors:  Ron Edgar
Journal:  Nature       Date:  2006-09-28       Impact factor: 49.962

4.  The daunting process of MIAME.

Authors:  David W Galbraith
Journal:  Nature       Date:  2006-11-02       Impact factor: 49.962

5.  NCBI GEO: mining millions of expression profiles--database and tools.

Authors:  Tanya Barrett; Tugba O Suzek; Dennis B Troup; Stephen E Wilhite; Wing-Chi Ngau; Pierre Ledoux; Dmitry Rudnev; Alex E Lash; Wataru Fujibuchi; Ron Edgar
Journal:  Nucleic Acids Res       Date:  2005-01-01       Impact factor: 16.971
  5 in total
  57 in total

1.  Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis.

Authors:  Ozren Bogdanovic; Steven W Long; Simon J van Heeringen; Arie B Brinkman; Jose Luis Gómez-Skarmeta; Hendrik G Stunnenberg; Peter L Jones; Gert Jan C Veenstra
Journal:  Genome Res       Date:  2011-06-02       Impact factor: 9.043

2.  Transcriptome and functional analysis of mating in the basidiomycete Schizophyllum commune.

Authors:  Susann Erdmann; Daniela Freihorst; Marjatta Raudaskoski; Wolfgang Schmidt-Heck; Elke-Martina Jung; Dominik Senftleben; Erika Kothe
Journal:  Eukaryot Cell       Date:  2011-12-30

3.  Development of transcriptomic biomarker signature in human saliva to detect lung cancer.

Authors:  Lei Zhang; Hua Xiao; Hui Zhou; Silverio Santiago; Jay M Lee; Edward B Garon; Jieping Yang; Ole Brinkmann; Xinmin Yan; David Akin; David Chia; David Elashoff; No-Hee Park; David T W Wong
Journal:  Cell Mol Life Sci       Date:  2012-06-12       Impact factor: 9.261

4.  Nucleotide composition-linked divergence of vertebrate core promoter architecture.

Authors:  Simon J van Heeringen; Waseem Akhtar; Ulrike G Jacobi; Robert C Akkers; Yutaka Suzuki; Gert Jan C Veenstra
Journal:  Genome Res       Date:  2011-01-10       Impact factor: 9.043

5.  Methodologies for extracting functional pharmacogenomic experiments from international repository.

Authors:  Yi-An Lin; Annie Chiang; Ray Lin; Peggy Yao; Rong Chen; Atul Janardhan Butte
Journal:  AMIA Annu Symp Proc       Date:  2007-10-11

6.  Expression of V3 Versican by Rat Arterial Smooth Muscle Cells Promotes Differentiated and Anti-inflammatory Phenotypes.

Authors:  Inkyung Kang; Jeremy L Barth; Erin P Sproul; Dong Won Yoon; Gail A Workman; Kathleen R Braun; W Scott Argraves; Thomas N Wight
Journal:  J Biol Chem       Date:  2015-07-07       Impact factor: 5.157

7.  An Expanded Role for the RFX Transcription Factor DAF-19, with Dual Functions in Ciliated and Nonciliated Neurons.

Authors:  Elizabeth A De Stasio; Katherine P Mueller; Rosemary J Bauer; Alexander J Hurlburt; Sophie A Bice; Sophie L Scholtz; Prasad Phirke; Debora Sugiaman-Trapman; Loraina A Stinson; Haili B Olson; Savannah L Vogel; Zabdiel Ek-Vazquez; Yagmur Esemen; Jessica Korzynski; Kelsey Wolfe; Bonnie N Arbuckle; He Zhang; Gaelen Lombard-Knapp; Brian P Piasecki; Peter Swoboda
Journal:  Genetics       Date:  2018-01-03       Impact factor: 4.562

Review 8.  Nutritional genomics, polyphenols, diets, and their impact on dietetics.

Authors:  Stephen Barnes
Journal:  J Am Diet Assoc       Date:  2008-11

9.  NCBI GEO: archive for high-throughput functional genomic data.

Authors:  Tanya Barrett; Dennis B Troup; Stephen E Wilhite; Pierre Ledoux; Dmitry Rudnev; Carlos Evangelista; Irene F Kim; Alexandra Soboleva; Maxim Tomashevsky; Kimberly A Marshall; Katherine H Phillippy; Patti M Sherman; Rolf N Muertter; Ron Edgar
Journal:  Nucleic Acids Res       Date:  2008-10-21       Impact factor: 16.971

10.  Mining metastasis related genes by primary-secondary tumor comparisons from large-scale databases.

Authors:  Sangwoo Kim; Doheon Lee
Journal:  BMC Bioinformatics       Date:  2009-03-19       Impact factor: 3.169
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