Literature DB >> 1715981

A comparative study of the ribosomal RNA operons of Streptomyces coelicolor A3(2) and sequence analysis of rrnA.

G P van Wezel1, E Vijgenboom, L Bosch.   

Abstract

S. coelicolor A3(2) contains six ribosomal RNA operons. Here we describe the cloning of rrnA, rrnC and rrnE, thereby completing the cloning of all operons. Southern hybridisation of genomic DNA with a heterologous probe from the E.coli rrnB 16S rRNA gene showed differences in hybridisation among the six rRNA operon-containing bands. The nucleotide sequence of the 16S rRNA gene and the upstream region of rrnA was determined and compared with the corresponding sequence of rrnD, showing that the 16S rRNA genes are 99% identical. Substantial differences were found, however, in the upstream regions corresponding to the P1 and P2 promoters of rrnD. Southern analysis showed that some of the other rRNA operons of S.coelicolor A3(2) also differed in this part of the upstream region.

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Year:  1991        PMID: 1715981      PMCID: PMC328626          DOI: 10.1093/nar/19.16.4399

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  21 in total

1.  Sequence of the 5S rRNA gene and organization of ribosomal RNA operons in Streptomyces rimosus.

Authors:  M Plohl; V Gamulin
Journal:  FEMS Microbiol Lett       Date:  1991-01-15       Impact factor: 2.742

2.  Complete nucleotide sequence of a 16S ribosomal RNA gene from Streptomyces griseus subsp. griseus.

Authors:  E Kim; H Kim; K H Kang; Y H Kho; Y H Park
Journal:  Nucleic Acids Res       Date:  1991-03-11       Impact factor: 16.971

Review 3.  Ribosomal genes in Escherichia coli.

Authors:  L Lindahl; J M Zengel
Journal:  Annu Rev Genet       Date:  1986       Impact factor: 16.830

4.  Transcriptional analysis of the 16S rRNA gene of the rrnD gene set of Streptomyces coelicolor A3(2).

Authors:  H A Baylis; M J Bibb
Journal:  Mol Microbiol       Date:  1988-09       Impact factor: 3.501

5.  Complete nucleotide sequence of the 16S rRNA gene of Mycobacterium bovis BCG.

Authors:  Y Suzuki; A Nagata; Y Ono; T Yamada
Journal:  J Bacteriol       Date:  1988-06       Impact factor: 3.490

6.  Organisation of the ribosomal RNA genes in Streptomyces coelicolor A3(2).

Authors:  H A Baylis; M J Bibb
Journal:  Mol Gen Genet       Date:  1988-02

7.  Lambdoid phages that simplify the recovery of in vitro recombinants.

Authors:  N E Murray; W J Brammar; K Murray
Journal:  Mol Gen Genet       Date:  1977-01-07

8.  Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors.

Authors:  C Yanisch-Perron; J Vieira; J Messing
Journal:  Gene       Date:  1985       Impact factor: 3.688

9.  Organization and nucleotide sequence analysis of a ribosomal RNA gene cluster from Streptomyces ambofaciens.

Authors:  J L Pernodet; F Boccard; M T Alegre; J Gagnat; M Guérineau
Journal:  Gene       Date:  1989-06-30       Impact factor: 3.688

10.  Molecular cloning and characterization of an rRNA operon in Streptomyces lividans TK21.

Authors:  Y Suzuki; Y Ono; A Nagata; T Yamada
Journal:  J Bacteriol       Date:  1988-04       Impact factor: 3.490

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  12 in total

1.  Compilation of small ribosomal subunit RNA sequences.

Authors:  P De Rijk; J M Neefs; Y Van de Peer; R De Wachter
Journal:  Nucleic Acids Res       Date:  1992-05-11       Impact factor: 16.971

2.  New nucleotide sequence data on the EMBL File Server.

Authors: 
Journal:  Nucleic Acids Res       Date:  1991-11-25       Impact factor: 16.971

3.  The actinomycete Thermobispora bispora contains two distinct types of transcriptionally active 16S rRNA genes.

Authors:  Y Wang; Z Zhang; N Ramanan
Journal:  J Bacteriol       Date:  1997-05       Impact factor: 3.490

4.  Identification of cis-acting regulatory regions upstream of the rRNA operons of Rhodobacter sphaeroides.

Authors:  S C Dryden; S Kaplan
Journal:  J Bacteriol       Date:  1993-10       Impact factor: 3.490

5.  Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis.

Authors:  U Nübel; B Engelen; A Felske; J Snaidr; A Wieshuber; R I Amann; W Ludwig; H Backhaus
Journal:  J Bacteriol       Date:  1996-10       Impact factor: 3.490

6.  An engineered strong promoter for streptomycetes.

Authors:  Weishan Wang; Xiao Li; Juan Wang; Sihai Xiang; Xiaozhou Feng; Keqian Yang
Journal:  Appl Environ Microbiol       Date:  2013-05-17       Impact factor: 4.792

7.  Mapping of genes involved in macromolecular synthesis on the chromosome of Streptomyces coelicolor A3(2).

Authors:  G P van Wezel; M J Buttner; E Vijgenboom; L Bosch; D A Hopwood; H M Kieser
Journal:  J Bacteriol       Date:  1995-01       Impact factor: 3.490

8.  Sequence heterogeneity in the two 16S rRNA genes of Phormium yellow leaf phytoplasma.

Authors:  L W Liefting; M T Andersen; R E Beever; R C Gardner; R L Forster
Journal:  Appl Environ Microbiol       Date:  1996-09       Impact factor: 4.792

9.  Genome-wide analysis of in vivo binding of the master regulator DasR in Streptomyces coelicolor identifies novel non-canonical targets.

Authors:  Magdalena A Świątek-Połatyńska; Giselda Bucca; Emma Laing; Jacob Gubbens; Fritz Titgemeyer; Colin P Smith; Sébastien Rigali; Gilles P van Wezel
Journal:  PLoS One       Date:  2015-04-15       Impact factor: 3.240

10.  Roles of multiple promoters in transcription of ribosomal DNA: effects of growth conditions on precursor rRNA synthesis in mycobacteria.

Authors:  J A Gonzalez-y-Merchand; M J Colston; R A Cox
Journal:  J Bacteriol       Date:  1998-11       Impact factor: 3.490

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