Literature DB >> 1715971

The transposable element Tam1 from Antirrhinum majus shows structural homology to the maize transposon En/Spm and has no sequence specificity of insertion.

W K Nacken1, R Piotrowiak, H Saedler, H Sommer.   

Abstract

We present the genomic structure of Tam1, a transposable element from Antirrhinum majus. The Tam1 element is 15.2 kb long and includes two genes that are transcribed to produce a 2.4 kb (tnp1) and a 5 kb mRNA (tnp2). These transcripts partially overlap and the exons are scattered over the whole element. Tnp1 encodes a 53 kDa protein as deduced from the cDNA sequence. The 5 kb transcript of tnp2 contains an open reading frame that shares 45% homology with part of the tnpD gene of En/Spm from maize and 48% homology with an open reading frame of the Tgm element from Glycine max. We discuss the possible functions of these genes by analogy with En/Spm. Additionally, a number of flanking sequences of Tam1 insertions were analysed to investigate the sequence specificity of insertion. From these studies we conclude that Tam1 transposes predominantly into AT-rich regions that can be unique as well as repetitive. No specific target sequence of insertion could be found.

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Year:  1991        PMID: 1715971     DOI: 10.1007/bf00282466

Source DB:  PubMed          Journal:  Mol Gen Genet        ISSN: 0026-8925


  31 in total

1.  In vitro packaging of lambda and cosmid DNA.

Authors:  B Hohn
Journal:  Methods Enzymol       Date:  1979       Impact factor: 1.600

2.  Twin Mutations in Medium Variegated Pericarp Maize.

Authors:  I M Greenblatt; R A Brink
Journal:  Genetics       Date:  1962-04       Impact factor: 4.562

3.  Structural analysis of Tam3, a transposable element from Antirrhinum majus, reveals homologies to the Ac element from maize.

Authors:  R Hehl; W K Nacken; A Krause; H Saedler; H Sommer
Journal:  Plant Mol Biol       Date:  1991-02       Impact factor: 4.076

4.  Essential large transcripts of the maize Spm transposable element are generated by alternative splicing.

Authors:  P Masson; G Rutherford; J A Banks; N Fedoroff
Journal:  Cell       Date:  1989-08-25       Impact factor: 41.582

5.  The En/Spm transposable element of Zea mays contains splice sites at the termini generating a novel intron from a dSpm element in the A2 gene.

Authors:  A Menssen; S Höhmann; W Martin; P S Schnable; P A Peterson; H Saedler; A Gierl
Journal:  EMBO J       Date:  1990-10       Impact factor: 11.598

6.  cA lectin gene insertion has the structural features of a transposable element.

Authors:  L O Vodkin; P R Rhodes; R B Goldberg
Journal:  Cell       Date:  1983-10       Impact factor: 41.582

7.  Molecular analysis of the En/Spm transposable element system of Zea mays.

Authors:  A Pereira; H Cuypers; A Gierl; Z Schwarz-Sommer; H Saedler
Journal:  EMBO J       Date:  1986-05       Impact factor: 11.598

8.  Genetic and molecular analysis of the Enhancer (En) transposable element system of Zea mays.

Authors:  A Pereira; Z Schwarz-Sommer; A Gierl; I Bertram; P A Peterson; H Saedler
Journal:  EMBO J       Date:  1985-01       Impact factor: 11.598

9.  En/Spm encoded tnpA protein requires a specific target sequence for suppression.

Authors:  S R Grant; A Gierl; H Saedler
Journal:  EMBO J       Date:  1990-07       Impact factor: 11.598

10.  TnpA product encoded by the transposable element En-1 of Zea mays is a DNA binding protein.

Authors:  A Gierl; S Lütticke; H Saedler
Journal:  EMBO J       Date:  1988-12-20       Impact factor: 11.598

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  45 in total

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Authors:  T Panavas; J Weir; E L Walker
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2.  Multiple independent defective suppressor-mutator transposon insertions in Arabidopsis: a tool for functional genomics.

Authors:  A F Tissier; S Marillonnet; V Klimyuk; K Patel; M A Torres; G Murphy; J D Jones
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3.  A contiguous 66-kb barley DNA sequence provides evidence for reversible genome expansion.

Authors:  K Shirasu; A H Schulman; T Lahaye; P Schulze-Lefert
Journal:  Genome Res       Date:  2000-07       Impact factor: 9.043

4.  Structure and evolution of the hAT transposon superfamily.

Authors:  E Rubin; G Lithwick; A A Levy
Journal:  Genetics       Date:  2001-07       Impact factor: 4.562

5.  Survival of Tdc transposable elements of the En/Spm superfamily in the carrot genome.

Authors:  Y Itoh; M Hasebe; E Davies; J Takeda; Y Ozeki
Journal:  Mol Genet Genomics       Date:  2003-02-12       Impact factor: 3.291

6.  Genomic characterization of Rim2/Hipa elements reveals a CACTA-like transposon superfamily with unique features in the rice genome.

Authors:  G-D Wang; P-F Tian; Z-K Cheng; G Wu; J-M Jiang; D-B Li; Q Li; Z-H He
Journal:  Mol Genet Genomics       Date:  2003-09-26       Impact factor: 3.291

7.  MAK, a computational tool kit for automated MITE analysis.

Authors:  Guojun Yang; Timothy C Hall
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

8.  Retroelements, transposons and methylation status in the genome of oil palm (Elaeis guineensis) and the relationship to somaclonal variation.

Authors:  Sybille E Kubis; Alexandra M M F Castilho; Alexander V Vershinin; John Seymour Pat Heslop-Harrison
Journal:  Plant Mol Biol       Date:  2003-05       Impact factor: 4.076

9.  A large rearrangement involving genes and low-copy DNA interrupts the microcollinearity between rice and barley at the Rph7 locus.

Authors:  S Brunner; B Keller; C Feuillet
Journal:  Genetics       Date:  2003-06       Impact factor: 4.562

10.  Tourist: a large family of small inverted repeat elements frequently associated with maize genes.

Authors:  T E Bureau; S R Wessler
Journal:  Plant Cell       Date:  1992-10       Impact factor: 11.277

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