Literature DB >> 17158975

Exiguobacterium indicum sp. nov., a psychrophilic bacterium from the Hamta glacier of the Himalayan mountain ranges of India.

Preeti Chaturvedi1, S Shivaji1.   

Abstract

Strain HHS 31(T), a Gram-positive, motile, rod-shaped, non-spore-forming, alkaliphilic bacterium, was isolated from the melt water of a glacier. Phenotypic and chemotaxonomic characteristics indicate that strain HHS 31(T) is related to species of the genus Exiguobacterium. The 16S rRNA gene sequence similarities between HHS 31(T) and strains of known species confirm that it is closely related to members of the genus Exiguobacterium (93-99 %) and that it exhibits >97 % similarity with Exiguobacterium acetylicum DSM 20416(T) (98.9 %), Exiguobacterium antarcticum DSM 14480(T) (98.0 %), Exiguobacterium oxidotolerans JCM 12280(T) (97.9 %) and Exiguobacterium undae DSM 14481(T) (97.4 %). Phylogenetic analysis based on the 16S rRNA gene sequence further confirms the affiliation of HHS 31(T) with the genus Exiguobacterium. However, the levels of DNA-DNA relatedness between HHS 31(T) and E. oxidotolerans JCM 12280(T), E. acetylicum DSM 20416(T), E. undae DSM 14481(T) and E. antarcticum DSM 14480(T) are 50, 63, 67 and 28 %, respectively. Strain HHS 31(T) also differs from these four closely related species in terms of a number of phenotypic traits. The phenotypic, chemotaxonomic and phylogenetic data suggest that HHS 31(T) merits the status of a novel species, for which the name Exiguobacterium indicum sp. nov. is proposed. The type strain is HHS 31(T) (=LMG 23471(T)=IAM 15368(T)).

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Year:  2006        PMID: 17158975     DOI: 10.1099/ijs.0.64508-0

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  21 in total

1.  Bacterial diversity of soil in the vicinity of Pindari glacier, Himalayan mountain ranges, India, using culturable bacteria and soil 16S rRNA gene clones.

Authors:  S Shivaji; M S Pratibha; B Sailaja; K Hara Kishore; Ashish K Singh; Z Begum; Uttam Anarasi; S R Prabagaran; G S N Reddy; T N R Srinivas
Journal:  Extremophiles       Date:  2011-01       Impact factor: 2.395

2.  The Exiguobacterium genus: biodiversity and biogeography.

Authors:  Tatiana A Vishnivetskaya; Sophia Kathariou; James M Tiedje
Journal:  Extremophiles       Date:  2009-04-19       Impact factor: 2.395

3.  Culturable diversity and functional annotation of psychrotrophic bacteria from cold desert of Leh Ladakh (India).

Authors:  Ajar Nath Yadav; Shashwati Ghosh Sachan; Priyanka Verma; Satya Prakash Tyagi; Rajeev Kaushik; Anil K Saxena
Journal:  World J Microbiol Biotechnol       Date:  2014-11-05       Impact factor: 3.312

4.  Biochemical characterization of psychrophilic Mn-superoxide dismutase from newly isolated Exiguobacterium sp. OS-77.

Authors:  Kyoshiro Nonaka; Ki-Seok Yoon; Seiji Ogo
Journal:  Extremophiles       Date:  2014-01-12       Impact factor: 2.395

5.  Alkaline lipase production by novel meso-tolerant psychrophilic Exiguobacterium sp. strain (AMBL-20) isolated from glacier of northeastern Pakistan.

Authors:  Muhammad Talha Yasin; Yasir Ali; Khurshid Ahmad; Abdul Ghani; Kinza Amanat; Muhammad Mudassir Basheir; Muhammad Faheem; Saddam Hussain; Bashir Ahmad; Adil Hussain; Syed Ali Imran Bokhari
Journal:  Arch Microbiol       Date:  2020-12-15       Impact factor: 2.552

6.  Characterization of cadmium biosorption by Exiguobacterium sp. isolated from farmland soil near Cu-Pb-Zn mine.

Authors:  Jin Hee Park; Hyo-Taek Chon
Journal:  Environ Sci Pollut Res Int       Date:  2016-03-08       Impact factor: 4.223

7.  Culturable and culture-independent bacterial diversity and the prevalence of cold-adapted enzymes from the Himalayan mountain ranges of India and Nepal.

Authors:  Siddarthan Venkatachalam; Vasudevan Gowdaman; Solai Ramatchandirane Prabagaran
Journal:  Microb Ecol       Date:  2014-09-10       Impact factor: 4.552

8.  Draft Genome Sequence of Thermophilic Exiguobacterium sp. Strain JLM-2, Isolated from Deep-Sea Ferromanganese Nodules.

Authors:  De-Chao Zhang; Yan-Xia Liu; Ying-Yi Huo; Xue-Wei Xu; Xin-Zheng Li
Journal:  Genome Announc       Date:  2015-07-23

9.  Architecture of thermal adaptation in an Exiguobacterium sibiricum strain isolated from 3 million year old permafrost: a genome and transcriptome approach.

Authors:  Debora F Rodrigues; Natalia Ivanova; Zhili He; Marianne Huebner; Jizhong Zhou; James M Tiedje
Journal:  BMC Genomics       Date:  2008-11-18       Impact factor: 3.969

10.  Draft Genome Sequence of Exiguobacterium sp. Strain BMC-KP, an Environmental Isolate from Bryn Mawr, Pennsylvania.

Authors:  Peter Hyson; Joshua A Shapiro; Michelle W Wien
Journal:  Genome Announc       Date:  2015-10-08
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