Literature DB >> 17158670

The SXT conjugative element and linear prophage N15 encode toxin-antitoxin-stabilizing systems homologous to the tad-ata module of the Paracoccus aminophilus plasmid pAMI2.

Lukasz Dziewit1, Magdalena Jazurek, Lukasz Drewniak, Jadwiga Baj, Dariusz Bartosik.   

Abstract

A group of proteic toxin-antitoxin (TA) cassettes whose representatives are widely distributed among bacterial genomes has been identified. These cassettes occur in chromosomes, plasmids, bacteriophages, and noncomposite transposons, as well as in the SXT conjugative element of Vibrio cholerae. The following four homologous loci were subjected to detailed comparative studies: (i) tad-ata from plasmid pAMI2 of Paracoccus aminophilus (the prototype of this group), (ii) gp49-gp48 from the linear bacteriophage N15 of Escherichia coli, (iii) s045-s044 from SXT, and (iv) Z3230-Z3231 from the genomic island of enterohemorrhagic Escherichia coli O157:H7 strain EDL933. Functional analysis revealed that all but one of these loci (Z3230-Z3231) are able to stabilize heterologous replicons, although the host ranges varied. The TA cassettes analyzed have the following common features: (i) the toxins are encoded by the first gene of each operon; (ii) the antitoxins contain a predicted helix-turn-helix motif of the XRE family; and (iii) the cassettes have two promoters that are different strengths, one which is located upstream of the toxin gene and one which is located upstream of the antitoxin gene. All four toxins tested are functional in E. coli; overexpression of the toxins (in the absence of antitoxin) results in a bacteriostatic effect manifested by elongation of bacterial cells and growth arrest. The toxins have various effects on cell viability, which suggests that they may recognize different intracellular targets. Preliminary data suggest that different cellular proteases are involved in degradation of antitoxins encoded by the loci analyzed.

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Year:  2006        PMID: 17158670      PMCID: PMC1855756          DOI: 10.1128/JB.01610-06

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  76 in total

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Journal:  Nucleic Acids Res       Date:  1990-09-11       Impact factor: 16.971

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Journal:  J Mol Biol       Date:  1989-10-05       Impact factor: 5.469

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Authors:  F Corpet
Journal:  Nucleic Acids Res       Date:  1988-11-25       Impact factor: 16.971

4.  Tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 to 100 kDa.

Authors:  H Schägger; G von Jagow
Journal:  Anal Biochem       Date:  1987-11-01       Impact factor: 3.365

5.  Analysis of E. coli promoter sequences.

Authors:  C B Harley; R P Reynolds
Journal:  Nucleic Acids Res       Date:  1987-03-11       Impact factor: 16.971

6.  Improved single and multicopy lac-based cloning vectors for protein and operon fusions.

Authors:  R W Simons; F Houman; N Kleckner
Journal:  Gene       Date:  1987       Impact factor: 3.688

7.  Paracoccus aminophilus sp. nov. and Paracoccus aminovorans sp. nov., which utilize N,N-dimethylformamide.

Authors:  T Urakami; H Araki; H Oyanagi; K Suzuki; K Komagata
Journal:  Int J Syst Bacteriol       Date:  1990-07

8.  Identification of components of a new stability system of plasmid R1, ParD, that is close to the origin of replication of this plasmid.

Authors:  A Bravo; G de Torrontegui; R Díaz
Journal:  Mol Gen Genet       Date:  1987-11

9.  Stable inheritance of plasmid R1 requires two different loci.

Authors:  K Gerdes; J E Larsen; S Molin
Journal:  J Bacteriol       Date:  1985-01       Impact factor: 3.490

10.  Kanamycin-resistant vectors that are analogues of plasmids pUC8, pUC9, pEMBL8 and pEMBL9.

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Journal:  Gene       Date:  1986       Impact factor: 3.688

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  39 in total

1.  Autonomous and non-autonomous Tn3-family transposons and their role in the evolution of mobile genetic elements.

Authors:  Magdalena Szuplewska; Jakub Czarnecki; Dariusz Bartosik
Journal:  Mob Genet Elements       Date:  2015-02-03

2.  Evolutionary Paths That Expand Plasmid Host-Range: Implications for Spread of Antibiotic Resistance.

Authors:  Wesley Loftie-Eaton; Hirokazu Yano; Stephen Burleigh; Ryan S Simmons; Julie M Hughes; Linda M Rogers; Samuel S Hunter; Matthew L Settles; Larry J Forney; José M Ponciano; Eva M Top
Journal:  Mol Biol Evol       Date:  2015-12-14       Impact factor: 16.240

3.  Hypothetical functions of toxin-antitoxin systems.

Authors:  Roy David Magnuson
Journal:  J Bacteriol       Date:  2007-07-06       Impact factor: 3.490

4.  Comparative genomic analysis of ten Streptococcus pneumoniae temperate bacteriophages.

Authors:  Patricia Romero; Nicholas J Croucher; N Luisa Hiller; Fen Z Hu; Garth D Ehrlich; Stephen D Bentley; Ernesto García; Tim J Mitchell
Journal:  J Bacteriol       Date:  2009-06-05       Impact factor: 3.490

5.  Comprehensive Functional Analysis of the 18 Vibrio cholerae N16961 Toxin-Antitoxin Systems Substantiates Their Role in Stabilizing the Superintegron.

Authors:  Naeem Iqbal; Anne-Marie Guérout; Evelyne Krin; Frédérique Le Roux; Didier Mazel
Journal:  J Bacteriol       Date:  2015-04-20       Impact factor: 3.490

6.  Plasmid pAMI2 of Paracoccus aminophilus JCM 7686 carries N,N-dimethylformamide degradation-related genes whose expression is activated by a LuxR family regulator.

Authors:  Lukasz Dziewit; Michal Dmowski; Jadwiga Baj; Dariusz Bartosik
Journal:  Appl Environ Microbiol       Date:  2010-01-29       Impact factor: 4.792

7.  Comprehensive comparative-genomic analysis of type 2 toxin-antitoxin systems and related mobile stress response systems in prokaryotes.

Authors:  Kira S Makarova; Yuri I Wolf; Eugene V Koonin
Journal:  Biol Direct       Date:  2009-06-03       Impact factor: 4.540

8.  Transposable modules generated by a single copy of insertion sequence ISPme1 and their influence on structure and evolution of natural plasmids of Paracoccus methylutens DM12.

Authors:  Dariusz Bartosik; Mateusz Putyrski; Lukasz Dziewit; Edyta Malewska; Michal Szymanik; Ewa Jagiello; Jacek Lukasik; Jadwiga Baj
Journal:  J Bacteriol       Date:  2008-02-22       Impact factor: 3.490

9.  Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements.

Authors:  Michael P Ryan; J Tony Pembroke; Catherine C Adley
Journal:  BMC Microbiol       Date:  2009-11-26       Impact factor: 3.605

10.  Characterization of the phd-doc and ccd toxin-antitoxin cassettes from Vibrio superintegrons.

Authors:  Anne-Marie Guérout; Naeem Iqbal; Natacha Mine; Magaly Ducos-Galand; Laurence Van Melderen; Didier Mazel
Journal:  J Bacteriol       Date:  2013-03-08       Impact factor: 3.490

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