Literature DB >> 17158579

Single molecule energetics of F1-ATPase motor.

Eiro Muneyuki1, Takahiro Watanabe-Nakayama, Tetsuya Suzuki, Masasuke Yoshida, Takayuki Nishizaka, Hiroyuki Noji.   

Abstract

Motor proteins are essential in life processes because they convert the free energy of ATP hydrolysis to mechanical work. However, the fundamental question on how they work when different amounts of free energy are released after ATP hydrolysis remains unanswered. To answer this question, it is essential to clarify how the stepping motion of a motor protein reflects the concentrations of ATP, ADP, and P(i) in its individual actions at a single molecule level. The F(1) portion of ATP synthase, also called F(1)-ATPase, is a rotary molecular motor in which the central gamma-subunit rotates against the alpha(3)beta(3) cylinder. The motor exhibits clear step motion at low ATP concentrations. The rotary action of this motor is processive and generates a high torque. These features are ideal for exploring the relationship between free energy input and mechanical work output, but there is a serious problem in that this motor is severely inhibited by ADP. In this study, we overcame this problem of ADP inhibition by introducing several mutations while retaining high enzymatic activity. Using a probe of attached beads, stepping rotation against viscous load was examined at a wide range of free energy values by changing the ADP concentration. The results showed that the apparent work of each individual step motion was not affected by the free energy of ATP hydrolysis, but the frequency of each individual step motion depended on the free energy. This is the first study that examined the stepping motion of a molecular motor at a single molecule level with simultaneous systematic control of DeltaG(ATP). The results imply that microscopically defined work at a single molecule level cannot be directly compared with macroscopically defined free energy input.

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Year:  2006        PMID: 17158579      PMCID: PMC1796807          DOI: 10.1529/biophysj.106.097170

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  17 in total

1.  Resolution of distinct rotational substeps by submillisecond kinetic analysis of F1-ATPase.

Authors:  R Yasuda; H Noji; M Yoshida; K Kinosita; H Itoh
Journal:  Nature       Date:  2001-04-19       Impact factor: 49.962

Review 2.  The rotary machine in the cell, ATP synthase.

Authors:  H Noji; M Yoshida
Journal:  J Biol Chem       Date:  2000-11-15       Impact factor: 5.157

3.  Viscoelastic dynamics of actin filaments coupled to rotary F-ATPase: angular torque profile of the enzyme.

Authors:  O Pänke; D A Cherepanov; K Gumbiowski; S Engelbrecht; W Junge
Journal:  Biophys J       Date:  2001-09       Impact factor: 4.033

4.  Purine but not pyrimidine nucleotides support rotation of F(1)-ATPase.

Authors:  H Noji; D Bald; R Yasuda; H Itoh; M Yoshida; K Kinosita
Journal:  J Biol Chem       Date:  2001-03-28       Impact factor: 5.157

Review 5.  Rotation of F1-ATPase: how an ATP-driven molecular machine may work.

Authors:  Kazuhiko Kinosita; Kengo Adachi; Hiroyasu Itoh
Journal:  Annu Rev Biophys Biomol Struct       Date:  2004

Review 6.  The binding change mechanism for ATP synthase--some probabilities and possibilities.

Authors:  P D Boyer
Journal:  Biochim Biophys Acta       Date:  1993-01-08

7.  Kinetic mechanism of mitochondrial adenosine triphosphatase. ADP-specific inhibition as revealed by the steady-state kinetics.

Authors:  E A Vasilyeva; I B Minkov; A F Fitin; A D Vinogradov
Journal:  Biochem J       Date:  1982-01-15       Impact factor: 3.857

8.  The ADP that binds tightly to nucleotide-depleted mitochondrial F1-ATPase and inhibits catalysis is bound at a catalytic site.

Authors:  Y M Milgrom; P D Boyer
Journal:  Biochim Biophys Acta       Date:  1990-10-24

9.  The alpha 3(beta Y341W)3 gamma subcomplex of the F1-ATPase from the thermophilic Bacillus PS3 fails to dissociate ADP when MgATP is hydrolyzed at a single catalytic site and attains maximal velocity when three catalytic sites are saturated with MgATP.

Authors:  C Dou; P A Fortes; W S Allison
Journal:  Biochemistry       Date:  1998-11-24       Impact factor: 3.162

Review 10.  Rotation of F(1)-ATPase and the hinge residues of the beta subunit.

Authors:  T Masaike; N Mitome; H Noji; E Muneyuki; R Yasuda; K Kinosita; M Yoshida
Journal:  J Exp Biol       Date:  2000-01       Impact factor: 3.312

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  6 in total

1.  Thermodynamic efficiency and mechanochemical coupling of F1-ATPase.

Authors:  Shoichi Toyabe; Takahiro Watanabe-Nakayama; Tetsuaki Okamoto; Seishi Kudo; Eiro Muneyuki
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-13       Impact factor: 11.205

2.  Theoretical analysis of the F(1)-ATPase experimental data.

Authors:  Ruben Perez-Carrasco; J M Sancho
Journal:  Biophys J       Date:  2010-06-02       Impact factor: 4.033

3.  Tight Chemomechanical Coupling of the F1 Motor Relies on Structural Stability.

Authors:  Mana Tanaka; Tomohiro Kawakami; Tomoaki Okaniwa; Yohei Nakayama; Shoichi Toyabe; Hiroshi Ueno; Eiro Muneyuki
Journal:  Biophys J       Date:  2020-05-29       Impact factor: 4.033

4.  Direct observation of the myosin Va recovery stroke that contributes to unidirectional stepping along actin.

Authors:  Katsuyuki Shiroguchi; Harvey F Chin; Diane E Hannemann; Eiro Muneyuki; Enrique M De La Cruz; Kazuhiko Kinosita
Journal:  PLoS Biol       Date:  2011-04-12       Impact factor: 8.029

Review 5.  Experimental thermodynamics of single molecular motor.

Authors:  Shoichi Toyabe; Eiro Muneyuki
Journal:  Biophysics (Nagoya-shi)       Date:  2013-07-12

6.  Temperature-sensitive reaction intermediate of F1-ATPase.

Authors:  Rikiya Watanabe; Ryota Iino; Katsuya Shimabukuro; Masasuke Yoshida; Hiroyuki Noji
Journal:  EMBO Rep       Date:  2007-12-07       Impact factor: 8.807

  6 in total

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