Literature DB >> 17156283

A unified approach for simultaneous gene clustering and differential expression identification.

Ming Yuan1, Christina Kendziorski.   

Abstract

Although both clustering and identification of differentially expressed genes are equally essential in most microarray studies, the two tasks are often conducted without regard to each other. This is clearly not the most efficient way of extracting information. The main aim of this article is to develop a coherent statistical method that can simultaneously cluster and detect differentially expressed genes. Through information sharing between the two tasks, the proposed approach gives more sensible clustering among genes and is more sensitive in identifying differentially expressed genes. The improvement over existing methods is illustrated in both our simulation results and a case study.

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Year:  2006        PMID: 17156283     DOI: 10.1111/j.1541-0420.2006.00611.x

Source DB:  PubMed          Journal:  Biometrics        ISSN: 0006-341X            Impact factor:   2.571


  17 in total

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Journal:  BMC Med Genomics       Date:  2011-02-28       Impact factor: 3.063

4.  Joint analysis of differential gene expression in multiple studies using correlation motifs.

Authors:  Yingying Wei; Toyoaki Tenzen; Hongkai Ji
Journal:  Biostatistics       Date:  2014-08-19       Impact factor: 5.899

5.  Spiked Dirichlet Process Prior for Bayesian Multiple Hypothesis Testing in Random Effects Models.

Authors:  Sinae Kim; David B Dahl; Marina Vannucci
Journal:  Bayesian Anal       Date:  2009       Impact factor: 3.728

6.  GAMMA-BASED CLUSTERING VIA ORDERED MEANS WITH APPLICATION TO GENE-EXPRESSION ANALYSIS.

Authors:  Michael A Newton; Lisa M Chung
Journal:  Ann Stat       Date:  2010-12-01       Impact factor: 4.028

7.  Salt stress-induced changes in the transcriptome, compatible solutes, and membrane lipids in the facultatively phototrophic bacterium Rhodobacter sphaeroides.

Authors:  Minoru Tsuzuki; Oleg V Moskvin; Masayuki Kuribayashi; Kiichi Sato; Susana Retamal; Mitsuru Abo; Jill Zeilstra-Ryalls; Mark Gomelsky
Journal:  Appl Environ Microbiol       Date:  2011-09-09       Impact factor: 4.792

8.  A gene expression network model of type 2 diabetes links cell cycle regulation in islets with diabetes susceptibility.

Authors:  Mark P Keller; YounJeong Choi; Ping Wang; Dawn Belt Davis; Mary E Rabaglia; Angie T Oler; Donald S Stapleton; Carmen Argmann; Kathy L Schueler; Steve Edwards; H Adam Steinberg; Elias Chaibub Neto; Robert Kleinhanz; Scott Turner; Marc K Hellerstein; Eric E Schadt; Brian S Yandell; Christina Kendziorski; Alan D Attie
Journal:  Genome Res       Date:  2008-03-17       Impact factor: 9.043

9.  Sequential stopping for high-throughput experiments.

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Journal:  Biostatistics       Date:  2012-08-20       Impact factor: 5.899

10.  Gene expression profiling of asthma phenotypes demonstrates molecular signatures of atopy and asthma control.

Authors:  Judie A Howrylak; Matthew Moll; Scott T Weiss; Benjamin A Raby; Wei Wu; Eric P Xing
Journal:  J Allergy Clin Immunol       Date:  2016-01-12       Impact factor: 10.793

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