Literature DB >> 17155116

Designable structures are easy to unfold.

Cristiano L Dias1, Martin Grant.   

Abstract

We study the structural stability of models of proteins for which the selected folds are unusually stable to mutation, that is, designable. A two-dimensional hydrophobic-polar lattice model was used to determine designable folds and these folds were investigated through Langevin dynamics. We find that the phase diagram of these proteins depends on their designability. In particular, highly designable folds are found to be weaker, i.e., easier to unfold, than low designable ones. We expect this to be related to protein flexibility.

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Year:  2006        PMID: 17155116     DOI: 10.1103/PhysRevE.74.042902

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  2 in total

1.  Shape-dependent designability studies of lattice proteins.

Authors:  Myron Peto; Andrzej Kloczkowski; Robert L Jernigan
Journal:  J Phys Condens Matter       Date:  2007-07-18       Impact factor: 2.333

2.  Use of machine learning algorithms to classify binary protein sequences as highly-designable or poorly-designable.

Authors:  Myron Peto; Andrzej Kloczkowski; Vasant Honavar; Robert L Jernigan
Journal:  BMC Bioinformatics       Date:  2008-11-18       Impact factor: 3.169

  2 in total

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