Literature DB >> 17153913

Phytophthora genomics: the plant destroyers' genome decoded.

Francine Govers1, Mark Gijzen.   

Abstract

The year 2004 was an exciting one for the Phytophthora research community. The United States Department of Energy Joint Genome Institute (JGI) completed the draft genome sequence of two Phytophthora species, Phytophthora sojae and Phytophthora ramorum. In August of that year over 50 people gathered at JGI in Walnut Creek, California, for an annotation jamboree and searched for the secrets and surprises that the two genomes have in petto. This culminated in a paper in Science in September of this year describing the highlights of the sequencing project and emphasizing the power of having the genome sequences of two closely related organisms. This MPMI Focus issue on Phytophthora genomics contains a number of more specialized manuscripts centered on gene annotation and genome organization, and complemented with manuscripts that rely on genomics resources.

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Year:  2006        PMID: 17153913     DOI: 10.1094/MPMI-19-1295

Source DB:  PubMed          Journal:  Mol Plant Microbe Interact        ISSN: 0894-0282            Impact factor:   4.171


  23 in total

1.  A domain-centric analysis of oomycete plant pathogen genomes reveals unique protein organization.

Authors:  Michael F Seidl; Guido Van den Ackerveken; Francine Govers; Berend Snel
Journal:  Plant Physiol       Date:  2010-11-30       Impact factor: 8.340

2.  Effector trafficking: RXLR-dEER as extra gear for delivery into plant cells.

Authors:  Francine Govers; Klaas Bouwmeester
Journal:  Plant Cell       Date:  2008-07       Impact factor: 11.277

3.  Retraction Note to: Pathogen virulence of Phytophthora infestans: from gene to functional genomics.

Authors:  Suman Sanju; Aditi Thakur; Sundresha Siddappa; Rohini Sreevathsa; Nidhi Srivastava; Pradeep Shukla; B P Singh
Journal:  Physiol Mol Biol Plants       Date:  2015-01

Review 4.  Pathogen virulence of Phytophthora infestans: from gene to functional genomics.

Authors:  Suman Sanju; Aditi Thakur; Sundresha Siddappa; Rohini Sreevathsa; Nidhi Srivastava; Pradeep Shukla; B P Singh
Journal:  Physiol Mol Biol Plants       Date:  2013-04

5.  The hidden duplication past of the plant pathogen Phytophthora and its consequences for infection.

Authors:  Cindy Martens; Yves Van de Peer
Journal:  BMC Genomics       Date:  2010-06-03       Impact factor: 3.969

6.  RXLR-mediated entry of Phytophthora sojae effector Avr1b into soybean cells does not require pathogen-encoded machinery.

Authors:  Daolong Dou; Shiv D Kale; Xia Wang; Rays H Y Jiang; Nathan A Bruce; Felipe D Arredondo; Xuemin Zhang; Brett M Tyler
Journal:  Plant Cell       Date:  2008-07-11       Impact factor: 11.277

7.  Biologically active Phytophthora mating hormone prepared by catalytic asymmetric total synthesis.

Authors:  Syuzanna R Harutyunyan; Zhijian Zhao; Tim den Hartog; Klaas Bouwmeester; Adriaan J Minnaard; Ben L Feringa; Francine Govers
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-16       Impact factor: 11.205

8.  The Phytophthora sojae avirulence locus Avr3c encodes a multi-copy RXLR effector with sequence polymorphisms among pathogen strains.

Authors:  Suomeng Dong; Dinah Qutob; Jennifer Tedman-Jones; Kuflom Kuflu; Yuanchao Wang; Brett M Tyler; Mark Gijzen
Journal:  PLoS One       Date:  2009-05-15       Impact factor: 3.240

Review 9.  Computational models in plant-pathogen interactions: the case of Phytophthora infestans.

Authors:  Andrés Pinzón; Emiliano Barreto; Adriana Bernal; Luke Achenie; Andres F González Barrios; Raúl Isea; Silvia Restrepo
Journal:  Theor Biol Med Model       Date:  2009-11-12       Impact factor: 2.432

Review 10.  Runaway repeats force expansion of the Phytophthora infestans genome.

Authors:  Mark Gijzen
Journal:  Genome Biol       Date:  2009-10-27       Impact factor: 13.583

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