| Literature DB >> 17134768 |
Andy Tait1, Annette Macleod, Alison Tweedie, Dan Masiga, C Michael R Turner.
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Year: 2006 PMID: 17134768 PMCID: PMC2311417 DOI: 10.1016/j.molbiopara.2006.10.009
Source DB: PubMed Journal: Mol Biochem Parasitol ISSN: 0166-6851 Impact factor: 1.759
The genotypes of the metacyclic stage F1 progeny clones from two crosses, determined by micro and minisatellite markers as well as AFLP genotyping
| Cross | Clone | MLG | AFLP |
|---|---|---|---|
| 247 × 927 | F532/53 mcl 1 | 1 | ND |
| F532/72 mcl 1 | 2 | A | |
| F532/72 mcl 2 | 3 | B | |
| F532/72 mcl 3 | 4 | C | |
| F532/72 mcl 4 | 2 | A | |
| F532/72 mcl 5 | 5 | D | |
| F532/72 mcl 6 | 6 | E | |
| F532/72 mcl 7 | 7 | F | |
| F532/72 mcl 9 | 8 | G | |
| F532/72 mcl 8 | 9 | ND | |
| F974/70 mcl 4 | 10 | ND | |
| 247 × 386 | F9/34 mcl 1 | 11 | ND |
| F9/45 mcl 2 | 12 | H | |
| F9/45 mcl 7 | 13 | ND | |
| F9/45 mcl 11 | 13 | I | |
| F9/45 mcl 9 | 14 | J | |
| F9/45 mcl 10 | 14 | J | |
| F9/45 mcl 12 | 15 | ND | |
| F492/50 mcl 12 | 16 | K | |
| F492/50 mcl 13 | 17 | L | |
Each multilocus genotype (MLG) was based on the analysis of 12–13 micro- and minisatellite markers and each MLG that was different has been given a different number. The genotypes determined by AFLP used 157 segregating markers (247 × 386) and 185 markers (247 × 927). Each AFLP that was different has been given a different letter. ND, not determined.
Micro- and minisatellite markers used for genotyping
| Cross | Chromosome | Marker | Genetic distance (cM) |
|---|---|---|---|
| 927 × 247 | 1 | TB 1/1 | |
| 17.5 | |||
| TB 1/7 | |||
| 18.3 | |||
| TB 1/13 | |||
| 2 | TB 2/3 | ||
| 42.7 | |||
| TB 2/10 | |||
| 38.5 | |||
| TB 2/20 | |||
| 4 | TB 4/1 | ||
| 32.2 | |||
| TB 4/4 | |||
| 25.9 | |||
| TB 4/10 | |||
| 31.2 | |||
| TB 4/16 | |||
| 386 × 247 | 1 | TB 1/1 | |
| 11.1 | |||
| TB 1/4 | |||
| 50.6 | |||
| TG 1/4 | |||
| 2 | TB 2/3 | ||
| 42.7 | |||
| TB 2/10 | |||
| 38.5 | |||
| TB 2/20 | |||
| 4 | TB 4/1 | ||
| 54.7 | |||
| TB 4/8 | |||
| 31.8 | |||
| TB 4/14 | |||
The genetic distances are all based on the TREU 927 genetic map, except for marker TG1/4 which is only informative for the STIB 386/STIB 247cross. Markers TB 3/13, TB 5/4 and TB 10/14 on chromosomes 3, 5 and 10 were also used.
Fig. 1Autoradiograph of labelled AFLP gel with DNA samples digested with HindIII and Taq1. Each primer had a two-nucleotide extension (H-CA and T-AA) for selective amplification and fragments were separated on a 6% acrylamide gel. Tracks: 1-STIB 247; 2-STIB 386; 3-F9/45 mcl 2; 4-F9/45 mcl 11; 5-F492/50 mcl 12; 6-F492/50 mcl 13; 7-F9/45 mcl 9; 8-F9/45 mcl 10. Arrows indicate fragments that are heterozygous for polymorphisms in one of the two parental stocks and segregate in the progeny.