Literature DB >> 17134678

Nascent chain, mRNA, and ribosome complexes generated by a pure translation system.

Tomoaki Matsuura1, Hayato Yanagida, Junya Ushioda, Itaru Urabe, Tetsuya Yomo.   

Abstract

Ribosome display is based on the concept that ternary complexes consisting of a nascent chain, ribosome, and mRNA can be generated, thereby establishing the linkage between genotype and phenotype that is essential for evolutionary experiments. With cell extract-based in vitro translation systems, it has been shown that ternary complexes can be generated by omitting the termination codon from the constructs, which can be stabilized at low temperature in the presence of high Mg2+ concentrations. Using an Escherichia coli-based reconstituted in vitro translation system (PURE system), in which all components necessary for the translation reaction were highly purified and reconstituted, ternary complexes could be generated equally well with a variety of sequences at the 3' end of the RNA, even those with a termination codon. Moreover, the generated complexes were stable at temperatures between 4 and 50 degrees C, and are thus highly stable in contrast to previous assumptions.

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Year:  2006        PMID: 17134678     DOI: 10.1016/j.bbrc.2006.11.050

Source DB:  PubMed          Journal:  Biochem Biophys Res Commun        ISSN: 0006-291X            Impact factor:   3.575


  10 in total

1.  Compensatory evolution of a WW domain variant lacking the strictly conserved Trp residue.

Authors:  Hayato Yanagida; Tomoaki Matsuura; Tetsuya Yomo
Journal:  J Mol Evol       Date:  2007-12-18       Impact factor: 2.395

2.  Signal recognition particle-ribosome binding is sensitive to nascent chain length.

Authors:  Thomas R Noriega; Albert Tsai; Margaret M Elvekrog; Alexey Petrov; Saskia B Neher; Jin Chen; Niels Bradshaw; Joseph D Puglisi; Peter Walter
Journal:  J Biol Chem       Date:  2014-05-07       Impact factor: 5.157

3.  Comprehensive analysis of the effects of Escherichia coli ORFs on protein translation reaction.

Authors:  Yasuaki Kazuta; Jiro Adachi; Tomoaki Matsuura; Naoaki Ono; Hirotada Mori; Tetsuya Yomo
Journal:  Mol Cell Proteomics       Date:  2008-05-02       Impact factor: 5.911

4.  Evidence for context-dependent complementarity of non-Shine-Dalgarno ribosome binding sites to Escherichia coli rRNA.

Authors:  Pamela A Barendt; Najaf A Shah; Gregory A Barendt; Parth A Kothari; Casim A Sarkar
Journal:  ACS Chem Biol       Date:  2013-03-07       Impact factor: 5.100

5.  Broad-specificity mRNA-rRNA complementarity in efficient protein translation.

Authors:  Pamela A Barendt; Najaf A Shah; Gregory A Barendt; Casim A Sarkar
Journal:  PLoS Genet       Date:  2012-03-22       Impact factor: 5.917

6.  Ribosome display selection of a murine IgG₁ Fab binding affibody molecule allowing species selective recovery of monoclonal antibodies.

Authors:  Sebastian Grimm; Feifan Yu; Per-Åke Nygren
Journal:  Mol Biotechnol       Date:  2011-07       Impact factor: 2.695

7.  Efficiency of puromycin-based technologies mediated by release factors and a ribosome recycling factor.

Authors:  Hiroyuki Ohashi; Masamichi Ishizaka; Naoya Hirai; Etsuko Miyamoto-Sato
Journal:  Protein Eng Des Sel       Date:  2013-07-03       Impact factor: 1.650

8.  Nascent SecM chain outside the ribosome reinforces translation arrest.

Authors:  Zhuohao Yang; Ryo Iizuka; Takashi Funatsu
Journal:  PLoS One       Date:  2015-03-25       Impact factor: 3.240

9.  Single-molecule imaging of full protein synthesis by immobilized ribosomes.

Authors:  Sotaro Uemura; Ryo Iizuka; Taro Ueno; Yoshihiro Shimizu; Hideki Taguchi; Takuya Ueda; Joseph D Puglisi; Takashi Funatsu
Journal:  Nucleic Acids Res       Date:  2008-05-29       Impact factor: 16.971

Review 10.  Protein folding on the ribosome studied using NMR spectroscopy.

Authors:  Christopher A Waudby; Hélène Launay; Lisa D Cabrita; John Christodoulou
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2013-07-27       Impact factor: 9.795

  10 in total

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