Literature DB >> 17127679

QSCOP--SCOP quantified by structural relationships.

Stefan J Suhrer1, Markus Wiederstein, Manfred J Sippl.   

Abstract

UNLABELLED: The database SCOP (Structural Classification Of Proteins) has become a major resource in bioinformatics and protein science. A particular strength of SCOP is the flexibility of its rules enabling the preservation of the many details spotted by experts in the classification process. Here we endow classic SCOP Families with quantified structural information and comment on the structural diversity found in the SCOP hierarchy. AVAILABILITY: Quantified SCOP (QSCOP) is available as a public WEB service. http://services.came.sbg.ac.at.

Mesh:

Substances:

Year:  2006        PMID: 17127679     DOI: 10.1093/bioinformatics/btl594

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  7 in total

1.  Touring protein space with Matt.

Authors:  Noah M Daniels; Anoop Kumar; Lenore J Cowen; Matt Menke
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2011-04-01       Impact factor: 3.710

2.  Detection and alignment of 3D domain swapping proteins using angle-distance image-based secondary structural matching techniques.

Authors:  Chia-Han Chu; Wei-Cheng Lo; Hsin-Wei Wang; Yen-Chu Hsu; Jenn-Kang Hwang; Ping-Chiang Lyu; Tun-Wen Pai; Chuan Yi Tang
Journal:  PLoS One       Date:  2010-10-14       Impact factor: 3.240

3.  QSCOP-BLAST--fast retrieval of quantified structural information for protein sequences of unknown structure.

Authors:  Stefan J Suhrer; Markus Gruber; Manfred J Sippl
Journal:  Nucleic Acids Res       Date:  2007-05-03       Impact factor: 16.971

4.  SCOP2 prototype: a new approach to protein structure mining.

Authors:  Antonina Andreeva; Dave Howorth; Cyrus Chothia; Eugene Kulesha; Alexey G Murzin
Journal:  Nucleic Acids Res       Date:  2013-11-29       Impact factor: 16.971

Review 5.  Current progress in Structure-Based Rational Drug Design marks a new mindset in drug discovery.

Authors:  Valère Lounnas; Tina Ritschel; Jan Kelder; Ross McGuire; Robert P Bywater; Nicolas Foloppe
Journal:  Comput Struct Biotechnol J       Date:  2013-04-02       Impact factor: 7.271

6.  COPS--a novel workbench for explorations in fold space.

Authors:  Stefan J Suhrer; Markus Wiederstein; Markus Gruber; Manfred J Sippl
Journal:  Nucleic Acids Res       Date:  2009-05-22       Impact factor: 16.971

7.  Cross-over between discrete and continuous protein structure space: insights into automatic classification and networks of protein structures.

Authors:  Alberto Pascual-García; David Abia; Angel R Ortiz; Ugo Bastolla
Journal:  PLoS Comput Biol       Date:  2009-03-27       Impact factor: 4.475

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.