| Literature DB >> 17127213 |
Reiko Hayashi1, Takako Arauchi, Moe Tategu, Yuya Goto, Kenichi Yoshida.
Abstract
GINS, a heterotetramer of SLD5, PSF1, PSF2, and PSF3 proteins, is an emerging chromatin factor recognized to be involved in the initiation and elongation step of DNA replication. Although the yeast and Xenopus GINS genes are well documented, their orthologous genes in higher eukaryotes are not fully characterized. In this study, we report the genomic structure and transcriptional regulation of mammalian GINS genes. Serum stimulation increased the GINS mRNA levels in human cells. Reporter gene assay using putative GINS promoter sequences revealed that the expression of mammalian GINS is regulated by 17beta-Estradiol-stimulated estrogen receptor alpha, and human PSF3 acts as a gene responsive to transcription factor E2F1. The goal of this study is to present the current data so as to encourage further work in the field of GINS gene regulation and functions in mammalian cells.Entities:
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Year: 2006 PMID: 17127213 PMCID: PMC5054078 DOI: 10.1016/S1672-0229(06)60028-4
Source DB: PubMed Journal: Genomics Proteomics Bioinformatics ISSN: 1672-0229 Impact factor: 7.691
Conservation of Amino Acids in the GINS Proteins*
| Mammal | PSF1 | PSF2 | PSF3 | SLD5 | ||||
|---|---|---|---|---|---|---|---|---|
| Identify (%) | ORF (aa) | Identify (%) | ORF (aa) | Identify (%) | ORF (aa) | Identify (%) | ORF (aa) | |
| Human | 100 | 196 | 100 | 185 | 100 | 216 | 100 | 223 |
| Chimpanzee | 92 | 268 | 100 | 185 | 99 | 216 | – | – |
| Orangutan | – | – | – | – | 99 | 216 | – | – |
| Dog | 94 | 196 | 94 | 185 | 94 | 216 | 88 | 292 |
| Cow | 92 | 196 | 86 | 340 | 93 | 216 | 84 | 489 |
| Mouse | 92 | 196 | 92 | 185 | 89 | 216 | 87 | 223 |
| Rat | 93 | 196 | 92 | 434 | 90 | 216 | 88 | 223 |
The percentage conservation in mammals, including chimpanzee, orangutan, dog, cow, mouse, and rat proteins relative to the sequence of the human protein (taken as 100%) is presented. The lengths of the amino acid (aa) sequences are indicated. “–” indicates that the protein is not deposited in the databases.
Exon-Intron Structures of the Human PSF1 and Mouse Psf1 Genes*
| Exon No. | Nucleotide sequence around exon-intron boundaries of human | Nucleotide position of exon in human genome sequence | Exon (bp) | Intron (bp) |
|---|---|---|---|---|
| 1 | AGCGCG—TTCAAC gtgagg | 25328321–25328531 of NT_011387 | 211 | 5,896 |
| 2 | ttctag GAGGAT—TGATGT gtaagt | 25334426–25334490 of NT_011387 | 65 | 3,251 |
| 3 | tatcag GAATGA—ATACCT gtaagc | 25337740–25337838 of NT_011387 | 99 | 904 |
| 4 | tcctag GTATGA—GAAGAA gtgagt | 25338741–25338831 of NT_011387 | 91 | 7,017 |
| 5 | ttgcag ATGGAG—ATTGAA gtatgt | 25345847–25345963 of NT_011387 | 117 | 16,376 |
| 6 | tttcag GTCCGG—AGCCAG gtattt | 25362338–25362412 of NT_011387 | 75 | 4,148 |
| 7 | cctcag CACTTT—ATGGAG | 25366559–25367702 of NT_011387 | 1,144 | |
| Exon No. | Nucleotide sequence around exon-intron boundaries of mouse | Nucleotide position of exon in mouse genome sequence | Exon (bp) | Intron (bp) |
| 1 | GGAGCT—TTTAAT gtgagg | 76468–76660 of AL808125 | 193 | 2,989 |
| 2 | tttcag GAGGAC—TGATGT gtaagt | 79648–79712 of AL808125 | 65 | 3,292 |
| 3 | tctcag GAATGA—ATACCT gtgagt | 83003–82101 of AL808125 | 99 | 1,636 |
| 4 | tcctag GTATGA—GAAGAA gtaagt | 84736–84826 of AL808125 | 91 | 7,924 |
| 5 | tcacag ACGGAG—ATTGAA gtatgt | 92749–92865 of AL808125 | 117 | 2,045 |
| 6 | tttcag GTGCGG—AGTCAG gtagtt | 94909–94983 of AL808125 | 75 | 2,726 |
| 7 | ttgtag CACTTT—TTTCAC | 97708–98145 of AL808125 | 438 | |
The nucleotide sequences around the exon-intron boundaries are shown in upper-case (exon) and lower-case letters (intron). The exon and intron lengths (bp) are shown.
Exon-Intron Structures of the Human PSF2 and Mouse Psf2 Genes
| Exon No. | Nucleotide sequence around exon-intron boundaries of human | Nucleotide position of exon in human genome sequence | Exon (bp) | Intron (bp) |
|---|---|---|---|---|
| 1 | GCGGCC—ATCGGG gtgagg | 39336779–39336614 of NT_010498 | 116 | 1,236 |
| 2 | tggcag GGGGAC—ATGTAG gtaagg | 39335379–39335265 of NT_010498 | 115 | 5,780 |
| 3 | ttttag AAAAGT—AAATCA gtaagt | 39329486–39329387 of NT_010498 | 100 | 2,917 |
| 4 | ctttag TGCTTC—GCCAAG gtaggt | 39326471–39326345 of NT_010498 | 127 | 204 |
| 5 | ctttag CTGGAT—AACTCA | 39326142–39325479 of NT_010498 | 664 | |
| Exon No. | Nucleotide sequence around exon-intron boundaries of mouse | Nucleotide position of exon in mouse genome sequence | Exon (bp) | Intron (bp) |
| 1 | GGGAAA—ATCGGG gtgagc | 111624–111788 of AC103360 | 165 | 88 |
| 2 | ttgcag GGGGAC—ATGTGG gtgagc | 111875–111989 of AC103360 | 115 | 2,534 |
| 3 | tcagag AGAAAC—GAATCA gtgagt | 114522–114621 of AC103360 | 100 | 3,886 |
| 4 | cttcag TGCTTC—GCCAAG gtaggc | 118506–118632 of AC103360 | 127 | 272 |
| 5 | tttcag CTGGAC—TATACT | 118903–122081 of AC103360 | 3,179 | |
Exon-Intron Structures of the Human PSF3 and Mouse Psf3 Genes
| Exon No. | Nucleotide sequence around exon-intron boundaries of human | Nucleotide position of exon in human genome sequence | Exon (bp) | Intron (bp) |
|---|---|---|---|---|
| 1 | CCGCTT—CCACAG gtgagc | 2010301–2010569 of NT_086851 | 269 | 9,759 |
| 2 | ctgcag GGTTCC—CTGCAG ggcaag | 2020327–2020560 of NT_086851 | 234 | 1,169 |
| 3 | tcccag ACTTTT—TTAGCA | 2021728–2023378 of NT_086851 | 1,651 | |
| Exon No. | Nucleotide sequence around exon-intron boundaries of mouse | Nucleotide position of exon in mouse genome sequence | Exon (bp) | Intron (bp) |
| 1 | GAGTTT—CCTCAG gtgagg | 126499–126244 of AC113951 | 256 | 4,028 |
| 2 | acgcag GGTACA—CTGAAG gtaagt | 122217–121984 of AC113951 | 234 | 5,061 |
| 3 | cctcag ACTTTT—GCCTGC | 116924–115517 of AC113951 | 1,407 | |
Exon-Intron Structures of the Human SLD5 and Mouse Sld5 Genes
| Exon No. | Nucleotide sequence around exon-intron boundaries of human | Nucleotide position of exon in human genome sequence | Exon (bp) | Intron (bp) |
|---|---|---|---|---|
| 1 | GCGACT—CCCCGA gtgagc | 28874824–28874993 of NT_086740 | 170 | 789 |
| 2 | cattag GTTCCT—GAGCAG gtaagc | 28875781–28875895 of NT_086740 | 115 | 6,063 |
| 3 | ttttag GCCTGG—CACATG gtaaga | 28881957–28882043 of NT_086740 | 87 | 735 |
| 4 | taatag GAAGAA—ATGAAG gtttga | 28882777–28882890 of NT_086740 | 114 | 2,436 |
| 5 | tcacag ATAGAG—CAGAGA gtgagt | 28885325–28885422 of NT_086740 | 98 | 142 |
| 6 | tttcag GTTCAT—GGGCAG gtaaac | 28885563–28885651 of NT_086740 | 89 | 1,851 |
| 7 | tggcag TTCCCA—GCAGAG gtgagt | 28887501–28887591 of NT_086740 | 91 | 93 |
| 8 | tttcag GGACTA—AAAAAA | 28887683–28888085 of NT_086740 | 403 | |
| Exon No. | Nucleotide sequence around exon-intron boundaries of mouse | Nucleotide position of exon in mouse genome sequence | Exon (bp) | Intron (bp) |
| 1 | GTGTTT—TGCGAG gtgagc | 79323–79134 of AC126038 | 190 | 372 |
| 2 | tttcag GTGTAG—GAGCAG gtaagc | 78763–78644 of AC126038 | 120 | 2,141 |
| 3 | ttttag GCCTGG—CACATG gtaaga | 76504–76418 of AC126038 | 87 | 2,037 |
| 4 | taatag GAAGAA—ATGAAG gtttga | 74382–74269 of AC126038 | 114 | 2,903 |
| 5 | tcacag ATAGAG—CAAAGA gtaagt | 71367–71270 of AC126038 | 98 | 103 |
| 6 | ttccag GTATAT—GGGCAG gtaaga | 71168–71080 of AC126038 | 89 | 2,078 |
| 7 | tggcag TTCCCA—GCAGAG gtgagt | 69003–68913 of AC126038 | 91 | 75 |
| 8 | tttcag AGACTA—AAGCTT | 68839–68289 of AC126038 | 501 | |
Chromosomal Localization of the Human and Mouse GINS Genes
| Human | 20p11.21 | 16q24.1 | 16q21 | 8p11.21 |
| Mouse | 2G3 | 8E1 | 8C5 | 8A3 |
Fig. 1Expression profiles of GINS genes. A search was conducted based on the EST counts in human/mouse tissues (A) and during the developmental stages (B) in the UniGene database (EST Profile Viewer, NCBI). The datasets used for PSF1, PSF2, Psf3, and SLD5 genes were Hs. 360033, Hs. 433180, Mm. 35546, and Hs. 521557, respectively. The number of transcripts per million was calculated from the gene EST/total EST in the pool. C. Semi-quantitative RT-PCR analysis of the transcripts of GINS genes in Saos-2 cells after serum stimulation for 24 h. The number of PCR cycles is shown in parentheses. The housekeeping gene, GAPDH, was used as the control.
Fig. 2Transcriptional regulation of the human and mouse GINS genes. A. Schematic representation of the vicinity of the transcription start sites of the human and mouse GINS genes. The putative transcription factor E2F- (closed isosceles triangles) and NF-Y-binding sites (open isosceles triangles) are indicated with their scores (maximum score 100) calculated by the Transfac program. Exon 1 (open boxes) is indicated. Scale bar equals 500 bp. B. Human and mouse GINS promoter activities in asynchronously growing human cells. HeLa cells were transfected with 200 ng of reporter constructs and 400 ng of the expression vector for E2F1, together with 0.6 ng of pRL-TK. The pcDNA3 vector was used as the negative control. At 48 h after the transfection, the cells were harvested, and extracts were prepared to measure the firefly and Renilla luciferase activities. Values are represented as relative luciferase activities, with that of pGL3-Basic being taken as 1. C. The E2F-binding motif of the PSF3 promoter is sufficient to confer responses to ectopic E2F expression. The experiment was performed as described in panel B. Values are represented as relative luciferase activities, with that of the control vector pcDNA3 being taken as 1. Statistically significant (P < 0.05) induction is indicated by an asterisk. D. E2-induced activation of GINS promoter constructs in HeLa cells. Cells were transfected with the indicated reporter plasmids and pcDNA3 or pSG5-ERα expression vector, and the effects of E2 or DMSO on the luciferase activities were determined. Results are expressed as mean±S.D. for at least three triplicate determinations for each treatment group. Statistically significant (P < 0.05) induction is indicated by an asterisk.