Literature DB >> 17126083

Mechanism of interaction between human 8-oxoguanine-DNA glycosylase and AP endonuclease.

Victoria S Sidorenko1, Georgy A Nevinsky, Dmitry O Zharkov.   

Abstract

Human 8-oxoguanine-DNA glycosylase (OGG1) is the main human base excision protein that removes a mutagenic lesion 8-oxoguanine (8-oxoG) from DNA. Since OGG1 has DNA glycosylase and weak abasic site (AP) lyase activities and is characterized by slow product release, turnover of the enzyme acting alone is low. Recently it was shown that human AP endonuclease (APE1) enhances the activity of OGG1. This enhancement was proposed to be passive, resulting from APE1 binding to or cleavage of AP sites after OGG1 dissociation. Here we present evidence that APE1 could actively displace OGG1 from its product, directly increasing the turnover of OGG1. We have observed that APE1 forms an electrophoretically detectable complex with OGG1 cross-linked to DNA by sodium borohydride. Using oligonucleotide substrates with a single 8-oxoG residue located in their 5'-terminal, central or 3'-terminal part, we have demonstrated that OGG1 activity does not increase only for the first of these three substrates, indicating that APE1 interacts with the DNA stretch 5' to the bound OGG1 molecule. In kinetic experiments, APE1 enhanced the product release constant but not the rate constant of base excision by OGG1. Moreover, OGG1 bound to a tetrahydrofuran analog of an abasic site stimulated the activity of APE1 on this substrate. Using a concatemeric DNA substrate, we have shown that APE1 likely displaces OGG1 in a processive mode, with OGG1 remaining on DNA but sliding away in search for a new lesion. Altogether, our data support a model in which APE1 specifically recognizes an OGG1/DNA complex, distorts a stretch of DNA 5' to the OGG1 molecule, and actively displaces the glycosylase from the lesion.

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Year:  2006        PMID: 17126083     DOI: 10.1016/j.dnarep.2006.10.022

Source DB:  PubMed          Journal:  DNA Repair (Amst)        ISSN: 1568-7856


  45 in total

Review 1.  APE1/Ref-1 role in redox signaling: translational applications of targeting the redox function of the DNA repair/redox protein APE1/Ref-1.

Authors:  Mark R Kelley; Millie M Georgiadis; Melissa L Fishel
Journal:  Curr Mol Pharmacol       Date:  2012-01       Impact factor: 3.339

2.  Steady-state, pre-steady-state, and single-turnover kinetic measurement for DNA glycosylase activity.

Authors:  Akira Sassa; William A Beard; David D Shock; Samuel H Wilson
Journal:  J Vis Exp       Date:  2013-08-19       Impact factor: 1.355

3.  Coordination of MYH DNA glycosylase and APE1 endonuclease activities via physical interactions.

Authors:  Paz J Luncsford; Brittney A Manvilla; Dimeka N Patterson; Shuja S Malik; Jin Jin; Bor-Jang Hwang; Randall Gunther; Snigdha Kalvakolanu; Leonora J Lipinski; Weirong Yuan; Wuyuan Lu; Alexander C Drohat; A-Lien Lu; Eric A Toth
Journal:  DNA Repair (Amst)       Date:  2013-10-24

4.  Coordinating the initial steps of base excision repair. Apurinic/apyrimidinic endonuclease 1 actively stimulates thymine DNA glycosylase by disrupting the product complex.

Authors:  Megan E Fitzgerald; Alexander C Drohat
Journal:  J Biol Chem       Date:  2008-09-19       Impact factor: 5.157

5.  The mechanism of substrate search by base excision repair enzymes.

Authors:  G V Mechetin; D O Zharkov
Journal:  Dokl Biochem Biophys       Date:  2011-05-18       Impact factor: 0.788

6.  Interaction of apurinic/apyrimidinic endonuclease 2 (Apn2) with Myh1 DNA glycosylase in fission yeast.

Authors:  Jin Jin; Bor-Jang Hwang; Po-Wen Chang; Eric A Toth; A-Lien Lu
Journal:  DNA Repair (Amst)       Date:  2014-02-01

7.  Comparative Effects of Ions, Molecular Crowding, and Bulk DNA on the Damage Search Mechanisms of hOGG1 and hUNG.

Authors:  Shannen L Cravens; James T Stivers
Journal:  Biochemistry       Date:  2016-09-07       Impact factor: 3.162

8.  Sculpting of DNA at abasic sites by DNA glycosylase homolog mag2.

Authors:  Bjørn Dalhus; Line Nilsen; Hanne Korvald; Joy Huffman; Rune Johansen Forstrøm; Cynthia T McMurray; Ingrun Alseth; John A Tainer; Magnar Bjørås
Journal:  Structure       Date:  2012-12-13       Impact factor: 5.006

9.  Expression of 8-oxoguanine DNA glycosylase (Ogg1) in mouse retina.

Authors:  Karine Bigot; Julia Leemput; Monique Vacher; Anna Campalans; J Pablo Radicella; Emmanuelle Lacassagne; Alexandra Provost; Christel Masson; Maurice Menasche; Marc Abitbol
Journal:  Mol Vis       Date:  2009-06-05       Impact factor: 2.367

10.  ROS1 5-methylcytosine DNA glycosylase is a slow-turnover catalyst that initiates DNA demethylation in a distributive fashion.

Authors:  María Isabel Ponferrada-Marín; Teresa Roldán-Arjona; Rafael R Ariza
Journal:  Nucleic Acids Res       Date:  2009-05-13       Impact factor: 16.971

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