Literature DB >> 17125164

Analysis of data fusion methods in virtual screening: theoretical model.

Martin Whittle1, Valerie J Gillet, Peter Willett, Jens Loesel.   

Abstract

This paper presents a theoretical model of how data fusion can be used to combine the results of multiple similarity searches of chemical databases. The model is based on frequency distributions of similarity values that are fused using a multiple integration over regions defined by the particular fusion rule that is being applied. For pairwise fusion, the resulting double integrals are straightforward to evaluate for simple model distributions. Similarity values for recovered-active and recovered-nonactive frequency distributions are independently modeled using a constant background, linearly biased terms, and a first-order correlated term. The model shows that two standard fusion rules can give performance enhancements in some cases but that the results of fusion are dependent on many factors that, taken together, can lead to seemingly inconsistent levels of enhancement.

Mesh:

Year:  2006        PMID: 17125164     DOI: 10.1021/ci049615w

Source DB:  PubMed          Journal:  J Chem Inf Model        ISSN: 1549-9596            Impact factor:   4.956


  7 in total

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Journal:  J Mol Model       Date:  2010-09-21       Impact factor: 1.810

2.  Brainstorming: weighted voting prediction of inhibitors for protein targets.

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Journal:  J Mol Model       Date:  2010-09-21       Impact factor: 1.810

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Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2012-11

4.  Understanding the foundations of the structural similarities between marketed drugs and endogenous human metabolites.

Authors:  Steve O'Hagan; Douglas B Kell
Journal:  Front Pharmacol       Date:  2015-05-13       Impact factor: 5.810

Review 5.  Fusing similarity rankings in ligand-based virtual screening.

Authors:  Peter Willett
Journal:  Comput Struct Biotechnol J       Date:  2013-02-24       Impact factor: 7.271

6.  IFPTML Mapping of Drug Graphs with Protein and Chromosome Structural Networks vs. Pre-Clinical Assay Information for Discovery of Antimalarial Compounds.

Authors:  Viviana Quevedo-Tumailli; Bernabe Ortega-Tenezaca; Humberto González-Díaz
Journal:  Int J Mol Sci       Date:  2021-12-02       Impact factor: 5.923

7.  Enhanced ranking of PknB Inhibitors using data fusion methods.

Authors:  Abhik Seal; Perumal Yogeeswari; Dharmaranjan Sriram; David J Wild
Journal:  J Cheminform       Date:  2013-01-14       Impact factor: 5.514

  7 in total

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