Literature DB >> 17124869

Novel enzymes through design and evolution.

Kenneth J Woycechowsky1, Katherina Vamvaca, Donald Hilvert.   

Abstract

The generation of enzymes with new catalytic activities remains a major challenge. So far, several different strategies have been developed to tackle this problem, including site-directed mutagenesis, random mutagenesis (directed evolution), antibody catalysis, computational redesign, and de novo methods. Using these techniques, a broad array of novel enzymes has been created (aldolases, decarboxylases, dehydratases, isomerases, oxidases, reductases, and others), although their low efficiencies (10 to 100 M(-1) s(-l)) compared to those of the best natural enzymes (10(6) to 10(8) M(-1) s(-1)) remains a significant concern. Whereas rational design might be the most promising and versatile approach to generating new activities, directed evolution seems to be the best way to optimize the catalytic properties of novel enzymes. Indeed, impressive successes in enzyme engineering have resulted from a combination of rational and random design.

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Year:  2007        PMID: 17124869     DOI: 10.1002/9780471224464.ch4

Source DB:  PubMed          Journal:  Adv Enzymol Relat Areas Mol Biol        ISSN: 0065-258X


  8 in total

1.  A rewired green fluorescent protein: folding and function in a nonsequential, noncircular GFP permutant.

Authors:  Philippa J Reeder; Yao-Ming Huang; Jonathan S Dordick; Christopher Bystroff
Journal:  Biochemistry       Date:  2010-12-03       Impact factor: 3.162

2.  Tunnel plasticity and quaternary structural integrity of a pentameric protein ring.

Authors:  Kenneth J Woycechowsky; Florian P Seebeck; Donald Hilvert
Journal:  Protein Sci       Date:  2006-05       Impact factor: 6.725

3.  Metabolic engineering of a genetic selection system with tunable stringency.

Authors:  Andreas C Kleeb; Maryam Hansson Edalat; Marianne Gamper; Johannes Haugstetter; Lars Giger; Martin Neuenschwander; Peter Kast; Donald Hilvert
Journal:  Proc Natl Acad Sci U S A       Date:  2007-08-22       Impact factor: 11.205

4.  The mutability of enzyme active-site shape determinants.

Authors:  Brian G Miller
Journal:  Protein Sci       Date:  2007-09       Impact factor: 6.725

5.  Redesigning dehalogenase access tunnels as a strategy for degrading an anthropogenic substrate.

Authors:  Martina Pavlova; Martin Klvana; Zbynek Prokop; Radka Chaloupkova; Pavel Banas; Michal Otyepka; Rebecca C Wade; Masataka Tsuda; Yuji Nagata; Jiri Damborsky
Journal:  Nat Chem Biol       Date:  2009-08-23       Impact factor: 15.040

Review 6.  Enzyme (re)design: lessons from natural evolution and computation.

Authors:  John A Gerlt; Patricia C Babbitt
Journal:  Curr Opin Chem Biol       Date:  2009-02-23       Impact factor: 8.822

Review 7.  Engineering cytochrome P450 biocatalysts for biotechnology, medicine and bioremediation.

Authors:  Santosh Kumar
Journal:  Expert Opin Drug Metab Toxicol       Date:  2010-02       Impact factor: 4.481

Review 8.  Enzyme recruitment and its role in metabolic expansion.

Authors:  Cindy Schulenburg; Brian G Miller
Journal:  Biochemistry       Date:  2014-01-31       Impact factor: 3.162

  8 in total

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